C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031069 Sepsecs-001 ENSMUSG00000029173 10090 - 5:52640087-52669729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031069 4.183±1.02 2.482±0.85 2.638±0.17 1.805±0.49 3.159±1.26 3.937±1.25 1.581±0.20 5.233±0.68 8.479±4.11 5.352±0.59 1.738±0.45 2.149±0.49 3.600±1.81 3.735±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OX CIL_0002OX_0002 CGP 5:52640087-52769344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001514 IDA selenocysteine incorporation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016785 IEA transferase activity, transferring selenium-containing groups
GO:0030170 IEA pyridoxal phosphate binding
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358971 SEPSECS-003 nonsense_mediated_decay Homo_sapiens 0 1550
ENST00000382103 SEPSECS-001 protein_coding Homo_sapiens 0 1683
ENST00000503150 SEPSECS-006 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000513285 SEPSECS-004 protein_coding Homo_sapiens 0 202
ENST00000514585 SEPSECS-002 nonsense_mediated_decay Homo_sapiens 0 1354

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