C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha polypeptide 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031108 Chrna9-001 ENSMUSG00000029205 10090 + 5:65967124-65977326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLungMusclePlacentaTestisENSMUST00000031108
Transcript ID Bladder Brain Breast Lung Muscle Placenta Testis
ENSMUST00000031108 0.011±0.00 0.004±0.00 0.054±0.02 0.192±0.17 0.079±0.05 0.182±0.03 0.327±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LL CIL_0005LL_0003 CGP 5:65863569-65977326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IMP acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006812 IMP cation transport
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007605 IEA sensory perception of sound
GO:0030054 IEA cell junction
GO:0042472 IMP inner ear morphogenesis
GO:0045211 IEA postsynaptic membrane
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310169 CHRNA9-001 protein_coding Homo_sapiens 0 1511
ENST00000509518 CHRNA9-002 processed_transcript Homo_sapiens 2e-32 143

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