C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CHY zinc finger domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031345 Rchy1-001 ENSMUSG00000029397 10090 - 5:91948904-91963068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031345 11.049±2.84 7.690±1.49 15.749±1.89 10.674±5.80 7.979±1.50 9.682±2.24 8.982±0.76 12.071±1.08 10.311±2.29 8.906±2.26 8.325±1.49 11.919±4.53 8.278±4.48 9.938±5.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SD CIL_0006SD_0002 CGP 5:91517615-91963068

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 ISS ubiquitin ligase complex
GO:0002039 IEA p53 binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005102 IEA receptor binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042803 IEA protein homodimerization activity
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324439 RCHY1-001 protein_coding Homo_sapiens 0 966
ENST00000380840 RCHY1-005 protein_coding Homo_sapiens 0 717
ENST00000504085 RCHY1-006 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000505105 RCHY1-003 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000505514 RCHY1-014 retained_intron Homo_sapiens 0 595
ENST00000507014 RCHY1-012 protein_coding Homo_sapiens 0 551
ENST00000512567 RCHY1-008 retained_intron Homo_sapiens 0 582
ENST00000512706 RCHY1-011 protein_coding Homo_sapiens 0 870
ENST00000513083 RCHY1-007 retained_intron Homo_sapiens 0 669
ENST00000513257 RCHY1-004 protein_coding Homo_sapiens 0 778
ENST00000513909 RCHY1-013 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000514021 RCHY1-009 processed_transcript Homo_sapiens 0 409
ENST00000514589 RCHY1-002 retained_intron Homo_sapiens 0 640
ENST00000611416 CYP20A1-201 protein_coding Homo_sapiens 0.00000003 68

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