C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029428 Stx2 10090 - 5:128984557-129008574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031378 Stx2-001 128984557-129008574 protein_coding
  ENSMUST00000100680 Stx2-002 128984563-129008535 protein_coding
  ENSMUST00000128448 Stx2-007 128986155-128989158 retained_intron
  ENSMUST00000141492 Stx2-004 128988908-129008423 processed_transcript
  ENSMUST00000144846 Stx2-005 128988665-128989849 retained_intron
  ENSMUST00000149877 Stx2-006 128993509-128999635 protein_coding
  ENSMUST00000151712 Stx2-003 128990641-129008549 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031378ENSMUST00000100680ENSMUST00000128448ENSMUST00000141492ENSMUST00000149877ENSMUST00000151712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031378 14.584±1.29 8.538±2.45 12.975±1.95 4.676±0.91 8.379±1.79 3.614±1.38 2.843±0.74 4.984±0.91 21.795±24.59 7.406±1.63 0.534±0.13 9.348±3.63 9.303±3.54 11.255±2.77
ENSMUST00000100680 4.607±0.00 2.707±0.21 N/A 4.705±0.00 3.324±0.73 0.891±0.00 1.111±0.00 1.755±0.49 1.853±1.03 2.125±0.00 1.514±0.49 6.768±1.01 5.626±3.38 N/A
ENSMUST00000128448 N/A N/A N/A 11.944±0.00 N/A N/A N/A N/A N/A N/A N/A 20.503±0.00 32.725±0.00 N/A
ENSMUST00000141492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.064±0.00 N/A
ENSMUST00000149877 N/A N/A N/A 33.120±0.00 N/A N/A N/A N/A N/A N/A N/A 66.670±0.00 144.289±20.88 118.623±0.00
ENSMUST00000151712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042T CIL_00042T_0002 CGP 5:128760401-129008574
CIL_000430 CIL_000430_0002 CGP 5:128984557-129024323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005911 IDA cell-cell junction
GO:0006886 IEA intracellular protein transport
GO:0007340 IEA acrosome reaction
GO:0007566 IC embryo implantation
GO:0009986 IDA cell surface
GO:0010468 IEA regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0030154 IDA cell differentiation
GO:0030193 IEA regulation of blood coagulation
GO:0031410 IDA cytoplasmic vesicle
GO:0045121 IDA membrane raft
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004618 stx2a syntaxin 2a protein_coding Danio_rerio
ENSDARG00000068217 stx2b syntaxin 2b protein_coding Danio_rerio
ENSG00000111450 STX2 syntaxin 2 protein_coding Homo_sapiens

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