C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100680 Stx2-002 ENSMUSG00000029428 10090 - 5:128984563-129008535 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000100680
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000100680 4.607±0.00 2.707±0.21 4.705±0.00 3.324±0.73 0.891±0.00 1.111±0.00 1.755±0.49 1.853±1.03 2.125±0.00 1.514±0.49 6.768±1.01 5.626±3.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042T CIL_00042T_0002 CGP 5:128760401-129008574
CIL_000430 CIL_000430_0002 CGP 5:128984557-129024323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005911 IDA cell-cell junction
GO:0006886 IEA intracellular protein transport
GO:0007340 IEA acrosome reaction
GO:0007566 IC embryo implantation
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0030154 IDA cell differentiation
GO:0031410 IDA cytoplasmic vesicle
GO:0045121 IDA membrane raft

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261653 STX2-001 protein_coding Homo_sapiens 0 941
ENST00000344271 STX2-003 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000392373 STX2-002 protein_coding Homo_sapiens 0 826
ENST00000540889 STX2-005 retained_intron Homo_sapiens 0 326

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