C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000430_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111450-ENSG00000132341 CGP 9606 12:130789600-130877678
GeneTranscriptPositionBiotype
ENSG00000111450 (STX2)
syntaxin 2 		ENST00000261653 (STX2-001) 130789600-130839266 protein_coding
ENST00000344271 (STX2-003) 130801254-130827250 nonsense_mediated_decay
ENST00000392373 (STX2-002) 130790834-130839194 protein_coding
ENST00000540889 (STX2-005) 130798393-130801460 retained_intron
ENSG00000132341 (RAN)
RAN, member RAS oncogene family 		ENST00000392367 (RAN-005) 130872096-130875963 protein_coding
ENST00000392369 (RAN-003) 130872070-130876281 protein_coding
ENST00000448750 (RAN-004) 130872037-130877676 protein_coding
ENST00000464211 (RAN-011) 130872096-130875924 retained_intron
ENST00000477395 (RAN-002) 130872070-130875665 retained_intron
ENST00000535090 (RAN-010) 130872076-130875784 protein_coding
ENST00000536606 (RAN-009) 130872047-130875709 nonsense_mediated_decay
ENST00000537745 (RAN-007) 130872066-130873839 retained_intron
ENST00000539498 (RAN-006) 130873103-130875639 retained_intron
ENST00000541630 (RAN-008) 130872066-130876733 protein_coding
ENST00000541679 (RAN-012) 130872082-130876234 protein_coding
ENST00000543796 (RAN-001) 130871879-130877678 protein_coding
CIL_000430_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029428-ENSMUSG00000029430 CGP 10090 5:128984557-129024323
GeneTranscriptPositionBiotype
ENSMUSG00000029428 (Stx2)
syntaxin 2 		ENSMUST00000031378 (Stx2-001) 128984557-129008574 protein_coding
ENSMUST00000100680 (Stx2-002) 128984563-129008535 protein_coding
ENSMUST00000128448 (Stx2-007) 128986155-128989158 retained_intron
ENSMUST00000141492 (Stx2-004) 128988908-129008423 processed_transcript
ENSMUST00000144846 (Stx2-005) 128988665-128989849 retained_intron
ENSMUST00000149877 (Stx2-006) 128993509-128999635 protein_coding
ENSMUST00000151712 (Stx2-003) 128990641-129008549 retained_intron
ENSMUSG00000029430 (Ran)
RAN, member RAS oncogene family 		ENSMUST00000031383 (Ran-001) 129020069-129024323 protein_coding
ENSMUST00000111343 (Ran-002) 129020272-129024323 protein_coding
ENSMUST00000134632 (Ran-003) 129020202-129020788 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000430_0001ENSG00000111450ENST00000261653ENST00000344271ENST00000392373ENST00000540889ENSG00000132341ENST00000392367ENST00000392369ENST00000448750ENST00000464211ENST00000477395ENST00000535090ENST00000536606ENST00000537745ENST00000539498ENST00000541630ENST00000541679ENST00000543796CIL_000430_0002ENSMUSG00000029428ENSMUST00000031378ENSMUST00000100680ENSMUST00000128448ENSMUST00000141492ENSMUST00000144846ENSMUST00000149877ENSMUST00000151712ENSMUSG00000029430ENSMUST00000031383ENSMUST00000111343ENSMUST00000134632
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000430_0001ENSG00000111450ENST00000261653ENST00000344271ENST00000392373ENST00000540889ENSG00000132341ENST00000392367ENST00000392369ENST00000535090ENST00000541679ENST00000543796CIL_000430_0002ENSMUSG00000029428ENSMUST00000031378ENSMUST00000100680ENSMUST00000128448ENSMUST00000141492ENSMUST00000149877ENSMUST00000151712ENSMUSG00000029430ENSMUST00000031383ENSMUST00000111343ENSMUST00000134632
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111450 ENST00000261653 3.938±0.00 3.485±0.00 N/A 1.839±0.67 3.484±1.86 3.693±2.86 1.745±1.15 3.743±0.00 3.295±0.00 2.254±1.04 0.993±0.77 3.757±2.08 2.819±0.86 6.831±0.00
ENST00000344271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.315±0.00
ENST00000392373 N/A N/A 1.437±0.00 1.162±0.24 1.414±0.00 1.699±0.00 0.770±0.00 N/A 2.323±0.00 1.642±0.00 N/A 1.475±0.00 N/A 9.216±6.17
ENST00000540889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.00 6.612±0.00 N/A 21.358±0.00
ENSG00000132341 ENST00000392367 N/A N/A 2.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392369 21.458±0.00 51.553±0.00 N/A 48.446±0.00 22.819±0.00 38.097±0.00 21.355±0.00 54.525±0.00 26.301±0.00 44.494±0.00 28.039±0.00 104.633±67.58 98.636±24.35 141.093±20.94
ENST00000448750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535090 20.132±0.00 N/A 3.152±0.00 N/A N/A 17.000±9.52 2.719±0.00 5.843±0.00 N/A 6.478±0.00 7.269±0.00 23.829±0.00 N/A N/A
ENST00000536606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541679 29.932±0.00 58.627±0.00 6.732±0.00 N/A 31.991±0.00 22.870±10.32 24.855±0.00 35.398±0.00 28.977±0.00 55.755±0.00 19.490±6.23 125.672±0.00 79.868±7.25 100.799±0.00
ENST00000543796 16.382±0.00 19.254±0.00 3.188±0.00 34.503±2.23 15.270±0.88 12.253±3.12 7.318±1.18 11.009±2.56 9.847±3.22 10.617±0.64 8.594±2.70 25.474±3.36 15.696±5.97 27.557±2.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029428 ENSMUST00000031378 14.584±1.29 8.538±2.45 12.975±1.95 4.676±0.91 8.379±1.79 3.614±1.38 2.843±0.74 4.984±0.91 21.795±24.59 7.406±1.63 0.534±0.13 9.348±3.63 9.303±3.54 11.255±2.77
ENSMUST00000100680 4.607±0.00 2.707±0.21 N/A 4.705±0.00 3.324±0.73 0.891±0.00 1.111±0.00 1.755±0.49 1.853±1.03 2.125±0.00 1.514±0.49 6.768±1.01 5.626±3.38 N/A
ENSMUST00000128448 N/A N/A N/A 11.944±0.00 N/A N/A N/A N/A N/A N/A N/A 20.503±0.00 32.725±0.00 N/A
ENSMUST00000141492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.064±0.00 N/A
ENSMUST00000144846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149877 N/A N/A N/A 33.120±0.00 N/A N/A N/A N/A N/A N/A N/A 66.670±0.00 144.289±20.88 118.623±0.00
ENSMUST00000151712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A
ENSMUSG00000029430 ENSMUST00000031383 41.155±11.06 39.551±3.03 33.105±4.26 64.713±33.37 30.426±15.48 41.708±10.85 20.826±1.71 25.909±5.37 89.334±79.82 32.395±2.05 27.255±1.98 49.976±12.24 56.916±40.69 94.082±41.53
ENSMUST00000111343 N/A 6.975±1.43 N/A N/A 5.778±0.43 4.372±0.63 N/A N/A 3.596±0.51 N/A N/A 7.346±1.05 N/A 39.109±6.98
ENSMUST00000134632 N/A 100.000±16.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 137.748±0.00 N/A

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