C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111450 STX2 9606 - 12:130789600-130839266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261653 STX2-001 130789600-130839266 protein_coding
  ENST00000344271 STX2-003 130801254-130827250 nonsense_mediated_decay
  ENST00000392373 STX2-002 130790834-130839194 protein_coding
  ENST00000540889 STX2-005 130798393-130801460 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261653ENST00000344271ENST00000392373ENST00000540889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261653 3.938±0.00 3.485±0.00 N/A 1.839±0.67 3.484±1.86 3.693±2.86 1.745±1.15 3.743±0.00 3.295±0.00 2.254±1.04 0.993±0.77 3.757±2.08 2.819±0.86 6.831±0.00
ENST00000344271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.315±0.00
ENST00000392373 N/A N/A 1.437±0.00 1.162±0.24 1.414±0.00 1.699±0.00 0.770±0.00 N/A 2.323±0.00 1.642±0.00 N/A 1.475±0.00 N/A 9.216±6.17
ENST00000540889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.00 6.612±0.00 N/A 21.358±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042T CIL_00042T_0001 CGP 12:130396137-130839266
CIL_000430 CIL_000430_0001 CGP 12:130789600-130877678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005911 IEA cell-cell junction
GO:0006886 IEA intracellular protein transport
GO:0007165 TAS signal transduction
GO:0007340 ISS acrosome reaction
GO:0007398 TAS ectoderm development
GO:0009887 TAS organ morphogenesis
GO:0009986 IEA cell surface
GO:0010468 IMP regulation of gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0030154 IEA cell differentiation
GO:0030193 IMP regulation of blood coagulation
GO:0031410 IEA cytoplasmic vesicle
GO:0043231 TAS intracellular membrane-bounded organelle
GO:0045121 IEA membrane raft
GO:0048306 ISS calcium-dependent protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004618 stx2a syntaxin 2a protein_coding Danio_rerio
ENSDARG00000068217 stx2b syntaxin 2b protein_coding Danio_rerio
ENSMUSG00000029428 Stx2 syntaxin 2 protein_coding Mus_musculus

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