C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00042T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000060709-ENSG00000111450 CGP 9606 12:130396137-130839266
GeneTranscriptPositionBiotype
ENSG00000060709 (RIMBP2)
RIMS binding protein 2 		ENST00000261655 (RIMBP2-001) 130396137-130517865 protein_coding
ENST00000535703 (RIMBP2-002) 130431647-130517917 protein_coding
ENST00000536002 (RIMBP2-201) 130431659-130716281 protein_coding
ENST00000536632 (RIMBP2-005) 130399751-130414710 protein_coding
ENST00000540658 (RIMBP2-004) 130397310-130407830 nonsense_mediated_decay
ENST00000544568 (RIMBP2-003) 130470202-130506770 retained_intron
ENSG00000111450 (STX2)
syntaxin 2 		ENST00000261653 (STX2-001) 130789600-130839266 protein_coding
ENST00000344271 (STX2-003) 130801254-130827250 nonsense_mediated_decay
ENST00000392373 (STX2-002) 130790834-130839194 protein_coding
ENST00000540889 (STX2-005) 130798393-130801460 retained_intron
ENSG00000256064 (RP11-117L5.4)
 ENST00000539532 (RP11-117L5.4-001) 130419535-130421019 lincRNA
ENSG00000256343 (RP11-662M24.1)
 ENST00000443685 (RP11-662M24.1-001) 130651371-130660651 lincRNA
ENST00000585405 (RP11-662M24.1-002) 130667469-130669233 lincRNA
ENST00000591364 (RP11-662M24.1-003) 130658768-130669122 lincRNA
ENSG00000279146 (RP11-117L5.3)
 ENST00000623766 (RP11-117L5.3-001) 130465008-130466315 TEC
ENSG00000279650 (RP11-989F5.4)
 ENST00000624414 (RP11-989F5.4-001) 130775694-130776546 TEC
ENSG00000279905 (RP11-117L5.1)
 ENST00000624734 (RP11-117L5.1-001) 130425004-130430661 TEC
CIL_00042T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029420-ENSMUSG00000029428 CGP 10090 5:128760401-129008574
GeneTranscriptPositionBiotype
ENSMUSG00000029420 (Rimbp2)
RIMS binding protein 2 		ENSMUST00000111346 (Rimbp2-201) 128760401-128953362 protein_coding
ENSMUSG00000029428 (Stx2)
syntaxin 2 		ENSMUST00000031378 (Stx2-001) 128984557-129008574 protein_coding
ENSMUST00000100680 (Stx2-002) 128984563-129008535 protein_coding
ENSMUST00000128448 (Stx2-007) 128986155-128989158 retained_intron
ENSMUST00000141492 (Stx2-004) 128988908-129008423 processed_transcript
ENSMUST00000144846 (Stx2-005) 128988665-128989849 retained_intron
ENSMUST00000149877 (Stx2-006) 128993509-128999635 protein_coding
ENSMUST00000151712 (Stx2-003) 128990641-129008549 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042T_0001ENSG00000060709ENST00000261655ENST00000535703ENST00000536002ENST00000536632ENST00000540658ENST00000544568ENSG00000111450ENST00000261653ENST00000344271ENST00000392373ENST00000540889ENSG00000256064ENST00000539532ENSG00000256343ENST00000443685ENST00000585405ENST00000591364ENSG00000279146ENST00000623766ENSG00000279650ENST00000624414ENSG00000279905ENST00000624734CIL_00042T_0002ENSMUSG00000029420ENSMUST00000111346ENSMUSG00000029428ENSMUST00000031378ENSMUST00000100680ENSMUST00000128448ENSMUST00000141492ENSMUST00000144846ENSMUST00000149877ENSMUST00000151712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042T_0001ENSG00000060709ENST00000261655ENST00000535703ENST00000536632ENST00000540658ENST00000544568ENSG00000111450ENST00000261653ENST00000344271ENST00000392373ENST00000540889ENSG00000256064ENST00000539532ENSG00000256343ENST00000443685ENSG00000279146ENST00000623766ENSG00000279650ENST00000624414ENSG00000279905ENST00000624734CIL_00042T_0002ENSMUSG00000029420ENSMUST00000111346ENSMUSG00000029428ENSMUST00000031378ENSMUST00000100680ENSMUST00000128448ENSMUST00000141492ENSMUST00000149877ENSMUST00000151712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000060709 ENST00000261655 0.050±0.00 0.049±0.00 0.223±0.00 4.860±0.00 N/A N/A 0.012±0.00 0.311±0.25 0.052±0.04 0.006±0.00 0.033±0.00 0.398±0.22 N/A 0.382±0.00
ENST00000535703 N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.023±0.00 0.023±0.00 N/A N/A N/A
ENST00000536002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536632 N/A N/A N/A N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A 0.457±0.00 0.033±0.00 N/A
ENST00000540658 N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 N/A
ENSG00000111450 ENST00000261653 3.938±0.00 3.485±0.00 N/A 1.839±0.67 3.484±1.86 3.693±2.86 1.745±1.15 3.743±0.00 3.295±0.00 2.254±1.04 0.993±0.77 3.757±2.08 2.819±0.86 6.831±0.00
ENST00000344271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.315±0.00
ENST00000392373 N/A N/A 1.437±0.00 1.162±0.24 1.414±0.00 1.699±0.00 0.770±0.00 N/A 2.323±0.00 1.642±0.00 N/A 1.475±0.00 N/A 9.216±6.17
ENST00000540889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.00 6.612±0.00 N/A 21.358±0.00
ENSG00000256064 ENST00000539532 0.035±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A 0.582±0.29
ENSG00000256343 ENST00000443685 0.011±0.00 0.055±0.00 N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.273±0.05
ENST00000585405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279146 ENST00000623766 0.089±0.00 N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.08 N/A 0.117±0.00
ENSG00000279650 ENST00000624414 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279905 ENST00000624734 0.072±0.00 0.200±0.00 0.117±0.00 N/A 0.078±0.00 0.039±0.00 0.025±0.00 N/A 0.028±0.00 0.075±0.01 0.016±0.00 0.120±0.00 0.043±0.00 0.436±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029420 ENSMUST00000111346 0.047±0.04 0.626±0.34 0.011±0.00 7.640±6.30 0.018±0.00 N/A 0.033±0.01 0.060±0.02 0.008±0.00 0.031±0.02 0.013±0.00 0.126±0.05 0.015±0.01 N/A
ENSMUSG00000029428 ENSMUST00000031378 14.584±1.29 8.538±2.45 12.975±1.95 4.676±0.91 8.379±1.79 3.614±1.38 2.843±0.74 4.984±0.91 21.795±24.59 7.406±1.63 0.534±0.13 9.348±3.63 9.303±3.54 11.255±2.77
ENSMUST00000100680 4.607±0.00 2.707±0.21 N/A 4.705±0.00 3.324±0.73 0.891±0.00 1.111±0.00 1.755±0.49 1.853±1.03 2.125±0.00 1.514±0.49 6.768±1.01 5.626±3.38 N/A
ENSMUST00000128448 N/A N/A N/A 11.944±0.00 N/A N/A N/A N/A N/A N/A N/A 20.503±0.00 32.725±0.00 N/A
ENSMUST00000141492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.064±0.00 N/A
ENSMUST00000144846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149877 N/A N/A N/A 33.120±0.00 N/A N/A N/A N/A N/A N/A N/A 66.670±0.00 144.289±20.88 118.623±0.00
ENSMUST00000151712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.739±0.00 N/A N/A N/A

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