C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glioblastoma amplified sequence
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029432 Gbas 10090 + 5:129725063-129758327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086046 Gbas-001 129725063-129758327 protein_coding
  ENSMUST00000124342 Gbas-002 129725099-129758250 nonsense_mediated_decay
  ENSMUST00000135160 Gbas-003 129753230-129754863 processed_transcript
  ENSMUST00000137604 Gbas-004 129752658-129757202 retained_intron
  ENSMUST00000186265 Gbas-201 129725099-129758250 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086046ENSMUST00000124342ENSMUST00000137604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086046 13.482±1.14 4.810±0.58 16.835±4.94 11.144±3.45 9.405±3.72 7.891±1.09 58.444±13.66 9.610±2.72 7.112±0.84 7.334±0.17 153.745±21.56 10.660±7.40 11.429±3.17 2.274±0.86
ENSMUST00000124342 26.461±3.09 34.943±5.38 17.437±1.39 13.828±0.99 30.750±10.29 23.704±3.97 183.633±6.07 34.465±1.90 6.044±1.84 21.485±1.34 64.387±12.34 19.144±5.54 11.812±3.56 5.277±0.84
ENSMUST00000137604 N/A N/A N/A N/A N/A N/A N/A N/A 2.255±0.00 N/A N/A 11.926±1.77 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IC CIL_0004IC_0002 CGP 5:129725063-129787252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 ISS mitochondrion
GO:0006119 IEA oxidative phosphorylation
GO:0006754 IEA ATP biosynthetic process
GO:2000984 IEA negative regulation of ATP citrate synthase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007264 gbas glioblastoma amplified sequence protein_coding Danio_rerio
ENSG00000146729 GBAS glioblastoma amplified sequence protein_coding Homo_sapiens

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