C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glioblastoma amplified sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124342 Gbas-002 ENSMUSG00000029432 10090 + 5:129725099-129758250 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124342 26.461±3.09 34.943±5.38 17.437±1.39 13.828±0.99 30.750±10.29 23.704±3.97 183.633±6.07 34.465±1.90 6.044±1.84 21.485±1.34 64.387±12.34 19.144±5.54 11.812±3.56 5.277±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IC CIL_0004IC_0002 CGP 5:129725063-129787252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISS mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322090 GBAS-001 protein_coding Homo_sapiens 0 880
ENST00000415967 GBAS-011 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000437587 GBAS-004 protein_coding Homo_sapiens 0 649
ENST00000446692 GBAS-005 protein_coding Homo_sapiens 0 627
ENST00000446778 GBAS-002 protein_coding Homo_sapiens 0 444
ENST00000456204 GBAS-007 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000464772 GBAS-010 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000497279 GBAS-003 retained_intron Homo_sapiens 0 656

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