C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glioblastoma amplified sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086046 Gbas-001 ENSMUSG00000029432 10090 + 5:129725063-129758327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086046 13.482±1.14 4.810±0.58 16.835±4.94 11.144±3.45 9.405±3.72 7.891±1.09 58.444±13.66 9.610±2.72 7.112±0.84 7.334±0.17 153.745±21.56 10.660±7.40 11.429±3.17 2.274±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IC CIL_0004IC_0002 CGP 5:129725063-129787252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 ISS mitochondrion
GO:0006119 IEA oxidative phosphorylation
GO:0006754 IEA ATP biosynthetic process
GO:2000984 IEA negative regulation of ATP citrate synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322090 GBAS-001 protein_coding Homo_sapiens 0 880
ENST00000415967 GBAS-011 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000437587 GBAS-004 protein_coding Homo_sapiens 0 649
ENST00000446692 GBAS-005 protein_coding Homo_sapiens 0 627
ENST00000446778 GBAS-002 protein_coding Homo_sapiens 0 444
ENST00000456204 GBAS-007 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000464772 GBAS-010 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000497279 GBAS-003 retained_intron Homo_sapiens 0 656

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