C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pseudouridine synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029507 Pus1 10090 - 5:110773667-110780659 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031481 Pus1-003 110773667-110780659 protein_coding
  ENSMUST00000031483 Pus1-001 110773667-110780596 protein_coding
  ENSMUST00000086643 Pus1-002 110773667-110780596 protein_coding
  ENSMUST00000112426 Pus1-004 110773667-110779967 protein_coding
  ENSMUST00000136483 Pus1-005 110775536-110780146 protein_coding
  ENSMUST00000149208 Pus1-006 110775545-110780591 protein_coding
  ENSMUST00000170468 Pus1-201 110773668-110780615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031481ENSMUST00000031483ENSMUST00000086643ENSMUST00000112426ENSMUST00000170468
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031481 N/A N/A N/A N/A N/A 2.677±0.90 N/A N/A 1.467±0.37 N/A 1.962±0.00 N/A N/A N/A
ENSMUST00000031483 5.079±1.54 9.084±2.21 3.911±0.77 2.907±0.80 3.746±1.33 4.117±0.86 1.973±0.50 7.271±1.48 5.463±3.06 3.340±0.57 2.004±1.51 8.387±1.14 6.008±1.32 2.018±0.54
ENSMUST00000086643 N/A 3.621±0.00 N/A N/A 1.460±0.00 1.540±0.00 N/A N/A N/A N/A 0.660±0.09 2.685±0.25 N/A N/A
ENSMUST00000112426 3.162±0.63 N/A 1.842±0.00 3.121±1.80 1.961±0.00 3.216±0.32 2.757±0.86 3.946±0.70 2.374±0.00 N/A 1.251±0.21 4.667±1.47 4.341±1.24 N/A
ENSMUST00000170468 9.643±3.23 4.899±1.92 6.197±1.99 2.659±0.59 6.903±1.68 4.128±1.30 2.633±0.57 8.427±1.26 10.087±6.39 3.067±1.90 1.708±0.66 8.257±4.56 12.365±6.55 1.483±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_00076X CIL_00076X_0002 CGP 5:110773667-110810097

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0009982 IDA pseudouridine synthase activity
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0031119 IDA tRNA pseudouridine synthesis
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045562 pus1 pseudouridine synthase 1 protein_coding Danio_rerio
ENSG00000177192 PUS1 pseudouridylate synthase 1 protein_coding Homo_sapiens

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