C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pseudouridine synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112426 Pus1-004 ENSMUSG00000029507 10090 - 5:110773667-110779967 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000112426
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000112426 3.162±0.63 1.842±0.00 3.121±1.80 1.961±0.00 3.216±0.32 2.757±0.86 3.946±0.70 2.374±0.00 1.251±0.21 4.667±1.47 4.341±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_00076X CIL_00076X_0002 CGP 5:110773667-110810097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0009982 IDA pseudouridine synthase activity
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0031119 IDA tRNA pseudouridine synthesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322060 PUS1-003 protein_coding Homo_sapiens 0 872
ENST00000376649 PUS1-001 protein_coding Homo_sapiens 0 935
ENST00000443358 PUS1-002 protein_coding Homo_sapiens 0 935
ENST00000542167 PUS1-004 protein_coding Homo_sapiens 0 935
ENST00000543754 PUS1-011 retained_intron Homo_sapiens 0 793

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