C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pseudouridine synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031483 Pus1-001 ENSMUSG00000029507 10090 - 5:110773667-110780596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031483 5.079±1.54 9.084±2.21 3.911±0.77 2.907±0.80 3.746±1.33 4.117±0.86 1.973±0.50 7.271±1.48 5.463±3.06 3.340±0.57 2.004±1.51 8.387±1.14 6.008±1.32 2.018±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_00076X CIL_00076X_0002 CGP 5:110773667-110810097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0009982 IDA pseudouridine synthase activity
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0031119 IDA tRNA pseudouridine synthesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322060 PUS1-003 protein_coding Homo_sapiens 0 1074
ENST00000376649 PUS1-001 protein_coding Homo_sapiens 0 1136
ENST00000443358 PUS1-002 protein_coding Homo_sapiens 0 1136
ENST00000456665 PUS1-008 protein_coding Homo_sapiens 0 206
ENST00000535067 PUS1-010 protein_coding Homo_sapiens 0 207
ENST00000537484 PUS1-007 protein_coding Homo_sapiens 0 206
ENST00000538037 PUS1-005 protein_coding Homo_sapiens 0 346
ENST00000542167 PUS1-004 protein_coding Homo_sapiens 0 1042
ENST00000543754 PUS1-011 retained_intron Homo_sapiens 0 793
ENST00000544213 PUS1-009 protein_coding Homo_sapiens 0 206
ENST00000544662 PUS1-006 retained_intron Homo_sapiens 0 207

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