C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031513 Srsf9-001 ENSMUSG00000029538 10090 + 5:115327177-115333080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031513 34.358±9.99 35.390±19.65 36.077±5.31 32.287±20.25 27.441±13.72 36.051±11.24 7.748±0.38 31.744±5.93 32.938±19.18 33.987±3.28 4.665±0.90 56.088±27.93 32.682±8.62 25.907±12.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229390 SRSF9-001 protein_coding Homo_sapiens 0 1107
ENST00000399149 SRSF9P1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000546942 SRSF9-002 retained_intron Homo_sapiens 0 595
ENST00000548326 SRSF9-004 retained_intron Homo_sapiens 0 274
ENST00000548792 SRSF9-003 retained_intron Homo_sapiens 0 516
ENST00000550458 SRSF9-005 protein_coding Homo_sapiens 0 283
ENST00000551765 GATC-001 protein_coding Homo_sapiens 0 274
ENST00000560043 RP11-752G15.4-001 processed_pseudogene Homo_sapiens 0 704
ENST00000603963 SRSF9-006 nonsense_mediated_decay Homo_sapiens 0 569

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