C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029669 Tspan12 10090 - 6:21771395-21852515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031678 Tspan12-001 21771395-21852515 protein_coding
  ENSMUST00000120965 Tspan12-002 21771395-21852088 protein_coding
  ENSMUST00000123116 Tspan12-004 21795578-21851981 protein_coding
  ENSMUST00000134635 Tspan12-003 21799950-21851914 protein_coding
  ENSMUST00000143531 Tspan12-005 21835389-21852169 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031678ENSMUST00000120965ENSMUST00000123116ENSMUST00000134635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031678 11.952±4.21 13.399±6.70 11.559±1.56 4.320±0.14 11.694±5.00 6.861±2.36 7.852±0.33 6.908±2.86 18.022±11.84 20.733±4.40 1.623±0.37 3.257±1.88 1.951±0.40 0.782±0.17
ENSMUST00000120965 N/A N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A 0.494±0.00 0.381±0.25 N/A
ENSMUST00000123116 N/A N/A N/A 10.351±0.00 13.920±0.00 N/A 5.170±0.00 N/A N/A N/A N/A 12.280±0.00 2.061±0.00 1.053±0.43
ENSMUST00000134635 N/A N/A N/A N/A N/A N/A 8.429±0.00 N/A N/A N/A N/A N/A 1.021±0.00 0.570±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U7 CIL_0005U7_0003 CGP 6:21215503-21852515
CIL_0007SO CIL_0007SO_0002 VISTA 6:21578055-22180750
CIL_0004XL CIL_0004XL_0003 CGP 6:21771395-21976038

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005887 IDA integral component of plasma membrane
GO:0007166 IMP cell surface receptor signaling pathway
GO:0010842 IMP retina layer formation
GO:0016021 IEA integral component of membrane
GO:0045765 IMP regulation of angiogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032389 tspan12 tetraspanin 12 protein_coding Danio_rerio
ENSG00000106025 TSPAN12 tetraspanin 12 protein_coding Homo_sapiens

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