C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031678 Tspan12-001 ENSMUSG00000029669 10090 - 6:21771395-21852515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031678
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031678 11.952±4.21 13.399±6.70 11.559±1.56 4.320±0.14 11.694±5.00 6.861±2.36 7.852±0.33 6.908±2.86 18.022±11.84 20.733±4.40 1.623±0.37 3.257±1.88 1.951±0.40 0.782±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U7 CIL_0005U7_0003 CGP 6:21215503-21852515
CIL_0007SO CIL_0007SO_0002 VISTA 6:21578055-22180750
CIL_0004XL CIL_0004XL_0003 CGP 6:21771395-21976038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005887 IDA integral component of plasma membrane
GO:0007166 IMP cell surface receptor signaling pathway
GO:0010842 IMP retina layer formation
GO:0016021 IEA integral component of membrane
GO:0045765 IMP regulation of angiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222747 TSPAN12-001 protein_coding Homo_sapiens 0 1415
ENST00000415871 TSPAN12-002 protein_coding Homo_sapiens 0 1271
ENST00000424710 TSPAN12-006 protein_coding Homo_sapiens 0 490
ENST00000430985 TSPAN12-004 protein_coding Homo_sapiens 0 457
ENST00000433758 TSPAN12-005 protein_coding Homo_sapiens 0 508
ENST00000441017 TSPAN12-007 protein_coding Homo_sapiens 0 601
ENST00000450414 TSPAN12-003 nonsense_mediated_decay Homo_sapiens 0 719

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