C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 3, member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029672 Fam3c 10090 - 6:22306520-22356243 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081288 Fam3c-002 22307882-22356243 protein_coding
  ENSMUST00000163371 Fam3c-006 22309327-22356073 nonsense_mediated_decay
  ENSMUST00000163963 Fam3c-003 22307882-22356098 protein_coding
  ENSMUST00000164669 Fam3c-005 22308460-22329456 protein_coding
  ENSMUST00000165576 Fam3c-001 22306520-22356166 protein_coding
  ENSMUST00000168965 Fam3c-004 22322290-22343913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081288ENSMUST00000163963ENSMUST00000164669ENSMUST00000165576ENSMUST00000168965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081288 0.601±0.00 N/A 6.426±0.28 9.530±10.62 3.314±0.00 N/A 2.007±0.00 0.719±0.00 4.441±1.83 N/A 1.852±0.37 26.259±10.81 15.107±7.88 3.737±3.15
ENSMUST00000163963 1.871±0.00 N/A N/A N/A 1.504±0.06 N/A N/A 0.459±0.03 N/A N/A N/A N/A N/A 0.955±0.00
ENSMUST00000164669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.630±0.00
ENSMUST00000165576 3.349±1.38 5.388±1.81 8.477±1.37 3.981±0.79 1.803±0.85 1.333±0.39 2.126±0.54 2.982±0.85 2.919±0.98 8.694±1.22 1.202±0.17 5.702±2.71 4.785±1.97 1.786±0.80
ENSMUST00000168965 N/A N/A N/A N/A N/A N/A N/A N/A 1.376±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R0 CIL_0003R0_0002 CGP 6:22288227-22356243
CIL_0003R1 CIL_0003R1_0002 CGP 6:22306520-23052916

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0031410 IEA cytoplasmic vesicle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056152 fam3c family with sequence similarity 3, member C protein_coding Danio_rerio
ENSG00000196937 FAM3C family with sequence similarity 3, member C protein_coding Homo_sapiens

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