C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003R1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196937-ENSG00000106278 CGP 9606 7:121348851-122062036
GeneTranscriptPositionBiotype
ENSG00000106278 (PTPRZ1)
protein tyrosine phosphatase, receptor-type, Z polypeptide 1 		ENST00000393386 (PTPRZ1-001) 121873089-122062036 protein_coding
ENST00000449182 (PTPRZ1-002) 121873361-122061361 protein_coding
ENST00000468641 (PTPRZ1-007) 122033858-122036632 retained_intron
ENST00000470504 (PTPRZ1-008) 122034013-122039584 retained_intron
ENST00000471837 (PTPRZ1-003) 121873161-121967023 processed_transcript
ENST00000474500 (PTPRZ1-010) 122059374-122061692 retained_intron
ENST00000483028 (PTPRZ1-004) 122011208-122013312 processed_transcript
ENST00000483995 (PTPRZ1-006) 122028434-122032080 retained_intron
ENST00000489114 (PTPRZ1-009) 122028218-122034340 retained_intron
ENSG00000196937 (FAM3C)
family with sequence similarity 3, member C 		ENST00000359943 (FAM3C-001) 121348851-121396334 protein_coding
ENST00000412653 (FAM3C-002) 121360056-121396364 protein_coding
ENST00000426156 (FAM3C-004) 121360092-121396308 protein_coding
ENST00000474082 (FAM3C-006) 121350383-121351541 retained_intron
ENST00000497622 (FAM3C-005) 121362705-121364552 retained_intron
ENSG00000213310 (CYCSP19)
cytochrome c, somatic pseudogene 19 		ENST00000411715 (CYCSP19-001) 121398452-121398767 processed_pseudogene
ENSG00000227743 (RP4-745K6.1)
 ENST00000432702 (RP4-745K6.1-001) 121643334-121650360 lincRNA
ENSG00000234985 (RP11-3L10.3)
 ENST00000416734 (RP11-3L10.3-001) 121440834-121441261 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003R1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029672-ENSMUSG00000068748 CGP 10090 6:22306520-23052916
GeneTranscriptPositionBiotype
ENSMUSG00000029672 (Fam3c)
family with sequence similarity 3, member C 		ENSMUST00000081288 (Fam3c-002) 22307882-22356243 protein_coding
ENSMUST00000163371 (Fam3c-006) 22309327-22356073 nonsense_mediated_decay
ENSMUST00000163963 (Fam3c-003) 22307882-22356098 protein_coding
ENSMUST00000164669 (Fam3c-005) 22308460-22329456 protein_coding
ENSMUST00000165576 (Fam3c-001) 22306520-22356166 protein_coding
ENSMUST00000168965 (Fam3c-004) 22322290-22343913 protein_coding
ENSMUSG00000068748 (Ptprz1)
protein tyrosine phosphatase, receptor type Z, polypeptide 1 		ENSMUST00000090568 (Ptprz1-201) 22875502-23052916 protein_coding
ENSMUSG00000098187 (Gm8927)
predicted gene 8927 		ENSMUST00000181978 (Gm8927-001) 22703436-22704416 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R1_0001ENSG00000106278ENST00000393386ENST00000449182ENST00000468641ENST00000470504ENST00000471837ENST00000474500ENST00000483028ENST00000483995ENST00000489114ENSG00000196937ENST00000359943ENST00000412653ENST00000426156ENST00000474082ENST00000497622ENSG00000213310ENST00000411715ENSG00000227743ENST00000432702ENSG00000234985ENST00000416734CIL_0003R1_0002ENSMUSG00000029672ENSMUST00000081288ENSMUST00000163371ENSMUST00000163963ENSMUST00000164669ENSMUST00000165576ENSMUST00000168965ENSMUSG00000068748ENSMUST00000090568ENSMUSG00000098187ENSMUST00000181978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R1_0001ENSG00000106278ENST00000393386ENST00000449182ENST00000470504ENST00000471837ENST00000474500ENSG00000196937ENST00000359943ENST00000412653ENSG00000213310ENST00000411715ENSG00000227743ENST00000432702ENSG00000234985ENST00000416734CIL_0003R1_0002ENSMUSG00000029672ENSMUST00000081288ENSMUST00000163963ENSMUST00000164669ENSMUST00000165576ENSMUST00000168965ENSMUSG00000068748ENSMUST00000090568ENSMUSG00000098187ENSMUST00000181978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106278 ENST00000393386 N/A 0.014±0.00 0.012±0.00 10.131±3.42 0.043±0.00 1.151±0.00 N/A N/A N/A 0.111±0.00 0.015±0.00 0.097±0.00 0.017±0.00 0.130±0.00
ENST00000449182 0.025±0.00 N/A N/A 6.158±0.00 0.626±0.58 0.568±0.25 0.047±0.03 N/A 0.565±0.00 0.753±0.03 0.060±0.05 0.242±0.13 0.041±0.02 0.193±0.00
ENST00000468641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A
ENST00000471837 N/A N/A N/A N/A N/A N/A N/A 0.693±0.00 2.033±0.00 2.199±0.00 N/A 0.956±0.00 N/A N/A
ENST00000474500 N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.117±0.02 N/A
ENST00000483028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196937 ENST00000359943 5.196±0.00 11.337±0.00 2.398±0.00 16.771±10.80 3.479±1.33 8.959±6.50 4.085±0.00 6.587±5.84 5.866±0.07 9.842±7.88 0.714±0.18 10.276±4.96 16.611±3.18 11.974±6.05
ENST00000412653 N/A N/A 9.280±0.00 N/A N/A N/A N/A N/A 7.674±0.00 N/A N/A N/A N/A N/A
ENST00000426156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213310 ENST00000411715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A 0.226±0.09
ENSG00000227743 ENST00000432702 N/A N/A N/A 0.253±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234985 ENST00000416734 0.120±0.00 0.258±0.00 N/A 0.077±0.00 0.289±0.00 0.390±0.00 N/A 0.140±0.00 0.122±0.00 0.068±0.00 0.058±0.00 0.170±0.00 N/A 0.181±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029672 ENSMUST00000081288 0.601±0.00 N/A 6.426±0.28 9.530±10.62 3.314±0.00 N/A 2.007±0.00 0.719±0.00 4.441±1.83 N/A 1.852±0.37 26.259±10.81 15.107±7.88 3.737±3.15
ENSMUST00000163371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163963 1.871±0.00 N/A N/A N/A 1.504±0.06 N/A N/A 0.459±0.03 N/A N/A N/A N/A N/A 0.955±0.00
ENSMUST00000164669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.630±0.00
ENSMUST00000165576 3.349±1.38 5.388±1.81 8.477±1.37 3.981±0.79 1.803±0.85 1.333±0.39 2.126±0.54 2.982±0.85 2.919±0.98 8.694±1.22 1.202±0.17 5.702±2.71 4.785±1.97 1.786±0.80
ENSMUST00000168965 N/A N/A N/A N/A N/A N/A N/A N/A 1.376±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000068748 ENSMUST00000090568 0.156±0.11 0.760±0.36 2.006±0.02 21.654±13.40 0.318±0.13 1.274±0.67 0.232±0.08 0.064±0.02 0.020±0.02 0.665±0.31 0.043±0.02 1.613±1.47 0.023±0.01 0.017±0.02
ENSMUSG00000098187 ENSMUST00000181978 0.089±0.00 N/A 0.021±0.00 0.036±0.01 0.127±0.10 0.060±0.00 0.063±0.04 0.065±0.00 0.041±0.03 N/A N/A 0.075±0.03 0.029±0.02 0.031±0.00

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