C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protection of telomeres 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029676 Pot1a 10090 - 6:25743737-25809246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115327 Pot1a-005 25757685-25809195 protein_coding
  ENSMUST00000115329 Pot1a-002 25748775-25809226 protein_coding
  ENSMUST00000115330 Pot1a-001 25743737-25809226 protein_coding
  ENSMUST00000134339 Pot1a-008 25744501-25746196 retained_intron
  ENSMUST00000136089 Pot1a-003 25798536-25809216 retained_intron
  ENSMUST00000147970 Pot1a-006 25800326-25801398 processed_transcript
  ENSMUST00000151186 Pot1a-004 25793598-25809246 retained_intron
  ENSMUST00000156985 Pot1a-007 25775684-25809222 processed_transcript
  ENSMUST00000166445 Pot1a-201 25744581-25798017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115327ENSMUST00000115329ENSMUST00000115330ENSMUST00000156985ENSMUST00000166445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115327 N/A 1.009±0.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A
ENSMUST00000115329 0.541±0.16 0.392±0.13 N/A 1.284±0.89 0.630±0.05 0.255±0.05 0.454±0.08 N/A 0.553±0.57 0.737±0.18 N/A 0.630±0.28 0.285±0.00 0.209±0.05
ENSMUST00000115330 2.631±0.26 0.720±0.46 3.097±0.48 3.079±1.62 2.109±0.78 1.033±0.62 2.008±0.33 1.635±0.65 4.108±4.06 2.560±0.19 2.883±0.50 2.169±1.05 1.362±0.80 0.688±0.23
ENSMUST00000156985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.502±0.00
ENSMUST00000166445 0.988±0.26 1.039±0.00 1.754±0.00 N/A 0.945±0.10 0.797±0.02 N/A 1.181±0.28 0.682±0.00 N/A 1.715±0.00 2.575±1.31 1.431±0.75 0.449±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OL CIL_0001OL_0002 CGP 6:25743737-28135178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0000781 ISO chromosome, telomeric region
GO:0000783 IDA nuclear telomere cap complex
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007004 ISS telomere maintenance via telomerase
GO:0042162 ISO telomeric DNA binding
GO:0043047 IDA single-stranded telomeric DNA binding
GO:0051276 IGI chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079915 pot1 protection of telomeres 1 homolog protein_coding Danio_rerio
ENSG00000128513 POT1 protection of telomeres 1 protein_coding Homo_sapiens

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