C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protection of telomeres 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115329 Pot1a-002 ENSMUSG00000029676 10090 - 6:25748775-25809226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000115329
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000115329 0.541±0.16 0.392±0.13 1.284±0.89 0.630±0.05 0.255±0.05 0.454±0.08 0.553±0.57 0.737±0.18 0.630±0.28 0.285±0.00 0.209±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OL CIL_0001OL_0002 CGP 6:25743737-28135178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 ISS chromosome, telomeric region
GO:0000783 IDA nuclear telomere cap complex
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007004 ISS telomere maintenance via telomerase
GO:0042162 ISO telomeric DNA binding
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0051276 IGI chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357628 POT1-001 protein_coding Homo_sapiens 0 1096
ENST00000446993 POT1-003 protein_coding Homo_sapiens 0 298
ENST00000607932 POT1-011 nonsense_mediated_decay Homo_sapiens 0 1005
ENST00000608057 POT1-012 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000609106 POT1-019 nonsense_mediated_decay Homo_sapiens 0 1096
ENST00000609702 POT1-013 protein_coding Homo_sapiens 0 272

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