C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cut-like homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029705 Cux1 10090 - 5:136248135-136567490 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004097 Cux1-001 136266415-136567445 protein_coding
  ENSMUST00000163906 Cux1-010 136274493-136302521 processed_transcript
  ENSMUST00000175918 Cux1-003 136248510-136567278 nonsense_mediated_decay
  ENSMUST00000175975 Cux1-008 136268367-136567246 protein_coding
  ENSMUST00000175998 Cux1-013 136248135-136360018 protein_coding
  ENSMUST00000176172 Cux1-011 136274486-136565432 protein_coding
  ENSMUST00000176216 Cux1-004 136248135-136567248 protein_coding
  ENSMUST00000176423 Cux1-017 136313234-136363295 protein_coding
  ENSMUST00000176486 Cux1-012 136274070-136373348 protein_coding
  ENSMUST00000176501 Cux1-007 136362295-136567252 retained_intron
  ENSMUST00000176745 Cux1-006 136248135-136567264 protein_coding
  ENSMUST00000176778 Cux1-005 136274455-136566351 protein_coding
  ENSMUST00000177297 Cux1-009 136250527-136567263 nonsense_mediated_decay
  ENSMUST00000177305 Cux1-002 136482875-136567490 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004097ENSMUST00000175998ENSMUST00000176172ENSMUST00000176216ENSMUST00000176745ENSMUST00000177297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004097 1.918±0.60 2.098±0.24 1.234±0.40 2.724±0.98 1.382±0.43 2.001±0.21 1.479±0.57 2.354±0.08 0.415±0.15 2.460±0.52 1.345±0.21 2.594±0.47 1.951±0.44 1.702±0.63
ENSMUST00000175998 10.499±1.33 11.789±1.83 N/A 10.877±1.32 8.030±1.07 13.418±2.18 6.187±1.50 23.647±3.75 2.132±0.96 10.393±3.57 N/A 16.404±4.05 N/A 12.567±1.16
ENSMUST00000176172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.462±0.26
ENSMUST00000176216 3.855±0.00 4.605±0.00 3.996±0.00 4.454±0.00 3.021±0.29 6.611±1.28 3.871±0.00 9.392±0.70 1.740±0.45 N/A 6.287±0.70 6.626±1.18 5.268±2.63 10.292±1.39
ENSMUST00000176745 9.482±1.48 11.720±2.16 11.658±1.15 14.919±3.58 7.561±0.72 13.010±2.00 11.174±0.50 22.329±1.57 3.544±1.54 10.376±0.73 16.959±2.26 11.173±3.97 10.835±3.58 11.244±4.57
ENSMUST00000177297 N/A N/A N/A 19.929±0.00 N/A N/A N/A N/A N/A N/A N/A 23.685±0.00 21.692±2.31 45.532±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IGI kidney development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0030173 IEA integral component of Golgi membrane
GO:0030324 IMP lung development
GO:0042491 IMP auditory receptor cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043134 cux1b cut-like homeobox 1b protein_coding Danio_rerio
ENSG00000257923 CUX1 cut-like homeobox 1 protein_coding Homo_sapiens

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