C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175998 Cux1-013 ENSMUSG00000029705 10090 - 5:136248135-136360018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000175998
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000175998 10.499±1.33 11.789±1.83 10.877±1.32 8.030±1.07 13.418±2.18 6.187±1.50 23.647±3.75 2.132±0.96 10.393±3.57 16.404±4.05 12.567±1.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IGI kidney development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0030173 IEA integral component of Golgi membrane
GO:0030324 IMP lung development
GO:0042491 IMP auditory receptor cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292535 CUX1-004 protein_coding Homo_sapiens 0 534
ENST00000292538 CUX1-001 protein_coding Homo_sapiens 0 1360
ENST00000360264 CUX1-005 protein_coding Homo_sapiens 0 534
ENST00000393824 CUX1-016 protein_coding Homo_sapiens 0 1349
ENST00000425244 CUX1-018 protein_coding Homo_sapiens 0 1360
ENST00000437600 CUX1-201 protein_coding Homo_sapiens 0 1360
ENST00000487284 CUX1-010 retained_intron Homo_sapiens 0 732
ENST00000546411 CUX1-008 protein_coding Homo_sapiens 0 532
ENST00000547394 CUX1-002 protein_coding Homo_sapiens 0 1360
ENST00000549414 CUX1-006 protein_coding Homo_sapiens 0 534
ENST00000550008 CUX1-007 protein_coding Homo_sapiens 0 534
ENST00000556210 CUX1-009 protein_coding Homo_sapiens 0 532
ENST00000558836 CUX1-021 processed_transcript Homo_sapiens 0 1360
ENST00000560541 CUX1-019 processed_transcript Homo_sapiens 0 1360
ENST00000622516 CUX1-003 protein_coding Homo_sapiens 0 1349

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