C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177297 Cux1-009 ENSMUSG00000029705 10090 - 5:136250527-136567263 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000177297
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000177297 19.929±0.00 23.685±0.00 21.692±2.31 45.532±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IGI kidney development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0030173 IEA integral component of Golgi membrane
GO:0030324 IMP lung development
GO:0042491 IMP auditory receptor cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 0.00000002 66
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 0.00000002 66
ENST00000261726 CUX2-001 protein_coding Homo_sapiens 0.00000000000001 88
ENST00000292535 CUX1-004 protein_coding Homo_sapiens 0 1495
ENST00000292538 CUX1-001 protein_coding Homo_sapiens 0 2305
ENST00000360264 CUX1-005 protein_coding Homo_sapiens 0 1644
ENST00000393824 CUX1-016 protein_coding Homo_sapiens 0 1978
ENST00000425244 CUX1-018 protein_coding Homo_sapiens 0 1733
ENST00000437600 CUX1-201 protein_coding Homo_sapiens 0 2305
ENST00000465461 CUX1-014 processed_transcript Homo_sapiens 0 320
ENST00000485792 CUX1-013 retained_intron Homo_sapiens 0 244
ENST00000487284 CUX1-010 retained_intron Homo_sapiens 0 562
ENST00000497815 CUX1-012 retained_intron Homo_sapiens 0 809
ENST00000546411 CUX1-008 protein_coding Homo_sapiens 0 1493
ENST00000547394 CUX1-002 protein_coding Homo_sapiens 0 1964
ENST00000549414 CUX1-006 protein_coding Homo_sapiens 0 1495
ENST00000550008 CUX1-007 protein_coding Homo_sapiens 0 1495
ENST00000556210 CUX1-009 protein_coding Homo_sapiens 0 1493
ENST00000558469 CUX1-020 processed_transcript Homo_sapiens 0 612
ENST00000558836 CUX1-021 processed_transcript Homo_sapiens 0 2017
ENST00000560541 CUX1-019 processed_transcript Homo_sapiens 0 2150
ENST00000606749 CUX1-022 processed_transcript Homo_sapiens 0 425
ENST00000607092 CUX1-011 retained_intron Homo_sapiens 0 294
ENST00000622516 CUX1-003 protein_coding Homo_sapiens 0 2266

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