C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004097 Cux1-001 ENSMUSG00000029705 10090 - 5:136266415-136567445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004097 1.918±0.60 2.098±0.24 1.234±0.40 2.724±0.98 1.382±0.43 2.001±0.21 1.479±0.57 2.354±0.08 0.415±0.15 2.460±0.52 1.345±0.21 2.594±0.47 1.951±0.44 1.702±0.63

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IGI kidney development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0030324 IMP lung development
GO:0042491 IMP auditory receptor cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 0.0000001 66
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 0.0000001 66
ENST00000261726 CUX2-001 protein_coding Homo_sapiens 0.00000000000001 88
ENST00000292535 CUX1-004 protein_coding Homo_sapiens 0 2748
ENST00000292538 CUX1-001 protein_coding Homo_sapiens 0 1653
ENST00000360264 CUX1-005 protein_coding Homo_sapiens 0 2748
ENST00000393824 CUX1-016 protein_coding Homo_sapiens 0 1321
ENST00000425244 CUX1-018 protein_coding Homo_sapiens 0 1075
ENST00000437600 CUX1-201 protein_coding Homo_sapiens 0 1814
ENST00000465461 CUX1-014 processed_transcript Homo_sapiens 0 320
ENST00000485792 CUX1-013 retained_intron Homo_sapiens 0 244
ENST00000497815 CUX1-012 retained_intron Homo_sapiens 0 893
ENST00000546411 CUX1-008 protein_coding Homo_sapiens 0 4237
ENST00000547394 CUX1-002 protein_coding Homo_sapiens 0 1306
ENST00000549414 CUX1-006 protein_coding Homo_sapiens 0 2163
ENST00000550008 CUX1-007 protein_coding Homo_sapiens 0 2028
ENST00000556210 CUX1-009 protein_coding Homo_sapiens 0 2028
ENST00000558469 CUX1-020 processed_transcript Homo_sapiens 0 612
ENST00000558836 CUX1-021 processed_transcript Homo_sapiens 0 1360
ENST00000560541 CUX1-019 processed_transcript Homo_sapiens 0 1493
ENST00000606749 CUX1-022 processed_transcript Homo_sapiens 0 425
ENST00000607092 CUX1-011 retained_intron Homo_sapiens 0 294
ENST00000622516 CUX1-003 protein_coding Homo_sapiens 0 1725

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