C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cut-like homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000257923 CUX1 9606 + 7:101815904-102283957 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292535 CUX1-004 101817602-102258233 protein_coding
  ENST00000292538 CUX1-001 101816005-102283957 protein_coding
  ENST00000360264 CUX1-005 101816011-102258233 protein_coding
  ENST00000393824 CUX1-016 101816008-102283478 protein_coding
  ENST00000425244 CUX1-018 101816021-102283957 protein_coding
  ENST00000437600 CUX1-201 101815904-102283957 protein_coding
  ENST00000465461 CUX1-014 102104353-102125778 processed_transcript
  ENST00000485792 CUX1-013 102104437-102115670 retained_intron
  ENST00000487284 CUX1-010 102274174-102283932 retained_intron
  ENST00000497815 CUX1-012 101815960-102112010 retained_intron
  ENST00000546411 CUX1-008 101817640-102249042 protein_coding
  ENST00000547394 CUX1-002 101816009-102283957 protein_coding
  ENST00000549414 CUX1-006 101817640-102249042 protein_coding
  ENST00000550008 CUX1-007 101817640-102249042 protein_coding
  ENST00000556210 CUX1-009 101817640-102249042 protein_coding
  ENST00000558469 CUX1-020 101818921-102111726 processed_transcript
  ENST00000558836 CUX1-021 101932343-102283912 processed_transcript
  ENST00000560541 CUX1-019 101913104-102283957 processed_transcript
  ENST00000606749 CUX1-022 101959390-102104459 processed_transcript
  ENST00000607092 CUX1-011 101816008-101916587 retained_intron
  ENST00000622516 CUX1-003 101815939-102283957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000292535ENST00000292538ENST00000360264ENST00000425244ENST00000437600ENST00000487284ENST00000497815ENST00000550008ENST00000556210ENST00000558469ENST00000560541ENST00000622516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000292535 1.708±0.00 1.598±0.00 N/A 1.083±0.00 N/A 2.007±0.00 N/A 1.371±0.00 0.827±0.15 3.507±0.00 N/A N/A 1.826±0.25 N/A
ENST00000292538 6.749±0.00 7.627±0.00 N/A 15.192±0.00 10.547±3.46 9.068±3.25 11.784±6.71 10.198±9.20 3.675±0.39 18.131±0.00 N/A 21.054±6.82 14.402±0.72 12.175±0.00
ENST00000360264 1.548±0.00 N/A 2.723±0.00 N/A 2.378±0.04 1.955±0.00 1.149±0.00 0.504±0.00 2.037±0.00 1.765±0.00 3.493±2.33 3.775±1.54 3.510±2.41 1.753±0.00
ENST00000425244 7.018±0.00 N/A N/A N/A N/A 9.076±0.00 N/A N/A 2.573±0.00 N/A N/A N/A N/A N/A
ENST00000437600 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.617±0.00 N/A 11.488±1.93 10.167±0.00 N/A
ENST00000487284 N/A N/A N/A N/A N/A N/A N/A N/A 5.122±0.00 N/A N/A N/A N/A N/A
ENST00000497815 N/A N/A N/A 5.484±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.985±0.00
ENST00000556210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.412±0.00
ENST00000558469 N/A N/A N/A N/A N/A 14.449±0.00 N/A 4.701±0.00 N/A 13.856±0.00 9.191±0.00 20.834±0.00 N/A N/A
ENST00000560541 N/A N/A 5.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622516 N/A N/A N/A 3.022±0.00 N/A N/A N/A 2.729±0.00 3.027±0.10 1.898±0.00 2.469±0.00 21.187±0.00 13.073±0.00 4.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FZ CIL_0002FZ_0002 CGP 7:101815904-102321711

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 ISS RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IEA kidney development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0007275 TAS multicellular organismal development
GO:0030173 IEA integral component of Golgi membrane
GO:0030324 IEA lung development
GO:0042491 IEA auditory receptor cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 ISS positive regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043134 cux1b cut-like homeobox 1b protein_coding Danio_rerio
ENSMUSG00000029705 Cux1 cut-like homeobox 1 protein_coding Mus_musculus

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