C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 5-hydroxymethylcytosine (hmC) binding, ES cell specific
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030060 Hmces 10090 + 6:87913935-87936629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032141 Hmces-001 87913935-87936629 protein_coding
  ENSMUST00000113606 Hmces-002 87914306-87936629 protein_coding
  ENSMUST00000124551 Hmces-004 87917924-87933425 processed_transcript
  ENSMUST00000132651 Hmces-003 87913958-87914981 processed_transcript
  ENSMUST00000148914 Hmces-005 87932993-87936529 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000032141
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000032141 11.903±0.00 12.980±0.58 10.778±0.00 11.874±0.00 12.439±1.62 11.297±0.51 10.223±2.53 20.747±1.08 24.551±0.00 8.746±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Z CIL_00030Z_0002 CGP 6:87887814-87936629
CIL_000310 CIL_000310_0002 CGP 6:87913935-87981637

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008233 IEA peptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077471 hmces 5-hydroxymethylcytosine (hmC) binding, ES cell-specific protein_coding Danio_rerio
ENSG00000183624 HMCES 5-hydroxymethylcytosine (hmC) binding, ES cell-specific protein_coding Homo_sapiens

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