C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000310_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183624-ENSG00000184897 CGP 9606 3:129278828-129316277
GeneTranscriptPositionBiotype
ENSG00000183624 (HMCES)
5-hydroxymethylcytosine (hmC) binding, ES cell-specific 		ENST00000383463 (HMCES-001) 129278840-129306186 protein_coding
ENST00000389735 (HMCES-002) 129278974-129305262 protein_coding
ENST00000417226 (HMCES-004) 129278846-129305293 protein_coding
ENST00000502878 (HMCES-003) 129278956-129305441 protein_coding
ENST00000509042 (HMCES-005) 129278828-129304751 protein_coding
ENST00000509551 (HMCES-009) 129278993-129302014 protein_coding
ENST00000510314 (HMCES-006) 129278880-129302134 protein_coding
ENST00000511665 (HMCES-007) 129279005-129302005 protein_coding
ENSG00000184897 (H1FX)
H1 histone family, member X 		ENST00000333762 (H1FX-001) 129314771-129316277 protein_coding
CIL_000310_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030060-ENSMUSG00000044927 CGP 10090 6:87913935-87981637
GeneTranscriptPositionBiotype
ENSMUSG00000030060 (Hmces)
5-hydroxymethylcytosine (hmC) binding, ES cell specific 		ENSMUST00000032141 (Hmces-001) 87913935-87936629 protein_coding
ENSMUST00000113606 (Hmces-002) 87914306-87936629 protein_coding
ENSMUST00000124551 (Hmces-004) 87917924-87933425 processed_transcript
ENSMUST00000132651 (Hmces-003) 87913958-87914981 processed_transcript
ENSMUST00000148914 (Hmces-005) 87932993-87936529 retained_intron
ENSMUSG00000044927 (H1fx)
H1 histone family, member X 		ENSMUST00000056403 (H1fx-001) 87980421-87981637 protein_coding
ENSMUSG00000068689 (Rps19-ps9)
ribosomal protein S19, pseudogene 9 		ENSMUST00000161787 (Rps19-ps9-001) 87948464-87948877 processed_pseudogene
ENSMUSG00000084950 (Gm5577)
predicted gene 5577 		ENSMUST00000134600 (Gm5577-003) 87980883-87984180 processed_transcript
ENSMUST00000143871 (Gm5577-002) 87981683-87984172 protein_coding
ENSMUST00000153372 (Gm5577-001) 87981683-88005471 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000310_0001ENSG00000183624ENST00000383463ENST00000389735ENST00000417226ENST00000502878ENST00000509042ENST00000509551ENST00000510314ENST00000511665ENSG00000184897ENST00000333762CIL_000310_0002ENSMUSG00000030060ENSMUST00000032141ENSMUST00000113606ENSMUST00000124551ENSMUST00000132651ENSMUST00000148914ENSMUSG00000044927ENSMUST00000056403ENSMUSG00000068689ENSMUST00000161787ENSMUSG00000084950ENSMUST00000134600ENSMUST00000143871ENSMUST00000153372
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000310_0001ENSG00000183624ENST00000383463ENST00000389735ENST00000417226ENST00000502878ENST00000509042ENST00000509551ENST00000510314ENSG00000184897ENST00000333762CIL_000310_0002ENSMUSG00000030060ENSMUST00000032141ENSMUSG00000044927ENSMUST00000056403ENSMUSG00000068689ENSMUST00000161787ENSMUSG00000084950ENSMUST00000134600
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183624 ENST00000383463 9.252±0.00 N/A N/A 14.253±0.00 11.382±0.00 3.318±2.05 2.395±1.04 4.287±0.00 1.138±0.33 4.325±0.00 5.450±3.36 7.323±3.14 4.068±0.06 9.340±0.73
ENST00000389735 10.883±0.00 11.692±0.00 N/A 8.978±0.00 19.857±0.00 12.594±0.00 9.892±0.00 7.254±4.91 7.522±0.00 8.862±8.20 5.318±2.57 7.053±3.71 6.733±2.41 16.141±0.26
ENST00000417226 N/A N/A N/A N/A 1.445±0.00 N/A N/A N/A 1.371±0.00 N/A 4.053±0.00 2.747±1.73 2.471±0.43 9.013±0.00
ENST00000502878 N/A N/A 1.348±0.00 N/A 1.527±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.068±0.00 N/A N/A
ENST00000509551 N/A N/A 0.718±0.00 5.227±0.00 1.089±0.00 4.409±0.00 N/A N/A N/A 2.485±0.00 N/A N/A N/A N/A
ENST00000510314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.412±0.00 N/A N/A
ENST00000511665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184897 ENST00000333762 92.903±0.00 203.312±0.00 0.907±0.00 97.553±0.00 53.275±48.20 41.670±38.56 14.783±14.12 55.050±0.00 53.974±0.00 82.259±79.90 32.257±28.04 123.215±2.57 87.242±31.17 37.977±17.54
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030060 ENSMUST00000032141 11.903±0.00 12.980±0.58 10.778±0.00 11.874±0.00 12.439±1.62 N/A N/A 11.297±0.51 10.223±2.53 N/A N/A 20.747±1.08 24.551±0.00 8.746±0.83
ENSMUST00000113606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000044927 ENSMUST00000056403 N/A 4.743±1.02 N/A 67.318±14.22 N/A N/A N/A N/A N/A N/A N/A 12.823±3.03 N/A 36.282±3.05
ENSMUSG00000068689 ENSMUST00000161787 0.131±0.00 N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A N/A N/A N/A N/A 0.133±0.00
ENSMUSG00000084950 ENSMUST00000134600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.592±1.50
ENSMUST00000143871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading