C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 5-hydroxymethylcytosine (hmC) binding, ES cell-specific
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183624 HMCES 9606 + 3:129278828-129306186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000383463 HMCES-001 129278840-129306186 protein_coding
  ENST00000389735 HMCES-002 129278974-129305262 protein_coding
  ENST00000417226 HMCES-004 129278846-129305293 protein_coding
  ENST00000502878 HMCES-003 129278956-129305441 protein_coding
  ENST00000509042 HMCES-005 129278828-129304751 protein_coding
  ENST00000509551 HMCES-009 129278993-129302014 protein_coding
  ENST00000510314 HMCES-006 129278880-129302134 protein_coding
  ENST00000511665 HMCES-007 129279005-129302005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383463ENST00000389735ENST00000417226ENST00000502878ENST00000509042ENST00000509551ENST00000510314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383463 9.252±0.00 N/A N/A 14.253±0.00 11.382±0.00 3.318±2.05 2.395±1.04 4.287±0.00 1.138±0.33 4.325±0.00 5.450±3.36 7.323±3.14 4.068±0.06 9.340±0.73
ENST00000389735 10.883±0.00 11.692±0.00 N/A 8.978±0.00 19.857±0.00 12.594±0.00 9.892±0.00 7.254±4.91 7.522±0.00 8.862±8.20 5.318±2.57 7.053±3.71 6.733±2.41 16.141±0.26
ENST00000417226 N/A N/A N/A N/A 1.445±0.00 N/A N/A N/A 1.371±0.00 N/A 4.053±0.00 2.747±1.73 2.471±0.43 9.013±0.00
ENST00000502878 N/A N/A 1.348±0.00 N/A 1.527±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.068±0.00 N/A N/A
ENST00000509551 N/A N/A 0.718±0.00 5.227±0.00 1.089±0.00 4.409±0.00 N/A N/A N/A 2.485±0.00 N/A N/A N/A N/A
ENST00000510314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.412±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Z CIL_00030Z_0001 CGP 3:129249606-129306186
CIL_000310 CIL_000310_0001 CGP 3:129278828-129316277

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077471 hmces 5-hydroxymethylcytosine (hmC) binding, ES cell-specific protein_coding Danio_rerio
ENSMUSG00000030060 Hmces 5-hydroxymethylcytosine (hmC) binding, ES cell specific protein_coding Mus_musculus

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