C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142021 Slc6a13-003 ENSMUSG00000030108 10090 + 6:121300289-121333591 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryTestisENSMUST00000142021
Transcript ID Brain Breast Ovary Testis
ENSMUST00000142021 0.452±0.00 0.454±0.00 0.475±0.23 0.008±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097256 SLC6A13-201 protein_coding Danio_rerio 0 514
ENST00000343164 SLC6A13-001 protein_coding Homo_sapiens 0 1400
ENST00000359674 SLC6A12-001 protein_coding Homo_sapiens 0 636
ENST00000397296 SLC6A12-201 protein_coding Homo_sapiens 0 636
ENST00000424061 SLC6A12-002 protein_coding Homo_sapiens 0 636
ENST00000436453 SLC6A13-002 protein_coding Homo_sapiens 0 318
ENST00000445055 SLC6A13-201 protein_coding Homo_sapiens 0 760
ENST00000534887 SLC6A13-009 retained_intron Homo_sapiens 0 267
ENST00000535498 SLC6A12-011 processed_transcript Homo_sapiens 0 274
ENST00000536824 SLC6A12-004 protein_coding Homo_sapiens 0 636
ENST00000536842 SLC6A13-008 retained_intron Homo_sapiens 0 907
ENST00000537793 SLC6A12-005 protein_coding Homo_sapiens 0 252
ENST00000537826 SLC6A12-003 retained_intron Homo_sapiens 1e-30 137
ENST00000538272 SLC6A12-009 processed_transcript Homo_sapiens 0 289
ENST00000539260 SLC6A13-005 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000540094 SLC6A12-015 retained_intron Homo_sapiens 0 220
ENST00000542379 SLC6A13-015 processed_transcript Homo_sapiens 0 296
ENST00000542947 SLC6A13-010 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000543722 SLC6A13-011 retained_intron Homo_sapiens 6.00036e-42 174
ENST00000544782 SLC6A12-014 retained_intron Homo_sapiens 0 274
ENST00000545058 SLC6A12-013 retained_intron Homo_sapiens 0 272
ENST00000546319 SLC6A13-004 protein_coding Homo_sapiens 0 313
ENST00000610642 SLC6A6-002 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000613060 SLC6A6-001 protein_coding Homo_sapiens 0 281
ENST00000615188 SLC6A6-007 processed_transcript Homo_sapiens 0.00004 53
ENST00000618278 SLC6A6-006 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000621751 SLC6A6-004 protein_coding Homo_sapiens 8e-30 135
ENST00000622176 SLC6A6-005 nonsense_mediated_decay Homo_sapiens 0.00007 53
ENST00000622186 SLC6A6-201 protein_coding Homo_sapiens 0 281

Loading