C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064580 Slc6a13-001 ENSMUSG00000030108 10090 + 6:121300227-121337733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064580 11.754±8.86 1.059±0.21 0.277±0.22 5.060±2.88 1.561±0.30 0.284±0.04 0.130±0.08 44.430±6.97 69.865±51.25 0.353±0.13 0.229±0.11 0.884±0.41 9.788±9.24 0.340±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097256 SLC6A13-201 protein_coding Danio_rerio 0 728
ENST00000343164 SLC6A13-001 protein_coding Homo_sapiens 0 2198
ENST00000359674 SLC6A12-001 protein_coding Homo_sapiens 0 822
ENST00000397296 SLC6A12-201 protein_coding Homo_sapiens 0 822
ENST00000424061 SLC6A12-002 protein_coding Homo_sapiens 0 822
ENST00000436453 SLC6A13-002 protein_coding Homo_sapiens 0 318
ENST00000445055 SLC6A13-201 protein_coding Homo_sapiens 0 1557
ENST00000534887 SLC6A13-009 retained_intron Homo_sapiens 0 267
ENST00000535498 SLC6A12-011 processed_transcript Homo_sapiens 0 342
ENST00000536824 SLC6A12-004 protein_coding Homo_sapiens 0 822
ENST00000536842 SLC6A13-008 retained_intron Homo_sapiens 0 907
ENST00000537793 SLC6A12-005 protein_coding Homo_sapiens 0 252
ENST00000537826 SLC6A12-003 retained_intron Homo_sapiens 1e-30 137
ENST00000538272 SLC6A12-009 processed_transcript Homo_sapiens 0 289
ENST00000539260 SLC6A13-005 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000539668 SLC6A13-012 processed_transcript Homo_sapiens 0 213
ENST00000540094 SLC6A12-015 retained_intron Homo_sapiens 0 220
ENST00000542379 SLC6A13-015 processed_transcript Homo_sapiens 0 296
ENST00000542947 SLC6A13-010 retained_intron Homo_sapiens 0 230
ENST00000543722 SLC6A13-011 retained_intron Homo_sapiens 0 340
ENST00000544782 SLC6A12-014 retained_intron Homo_sapiens 0 302
ENST00000545058 SLC6A12-013 retained_intron Homo_sapiens 0 272
ENST00000546319 SLC6A13-004 protein_coding Homo_sapiens 0 327
ENST00000610642 SLC6A6-002 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000613060 SLC6A6-001 protein_coding Homo_sapiens 0 318
ENST00000615188 SLC6A6-007 processed_transcript Homo_sapiens 0.00004 53
ENST00000618278 SLC6A6-006 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000621751 SLC6A6-004 protein_coding Homo_sapiens 8e-30 135
ENST00000622176 SLC6A6-005 nonsense_mediated_decay Homo_sapiens 0.00007 53
ENST00000622186 SLC6A6-201 protein_coding Homo_sapiens 0 318

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