C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005108 Kdm5a-001 ENSMUSG00000030180 10090 + 6:120364124-120444574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000005108
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000005108 1.641±0.28 2.063±0.63 2.318±0.00 0.917±0.26 1.766±0.00 2.037±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_00083Y CIL_00083Y_0002 VISTA 6:120053928-120655330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382815 KDM5A-201 protein_coding Homo_sapiens 0 6645
ENST00000399788 KDM5A-001 protein_coding Homo_sapiens 0 7347
ENST00000535014 KDM5A-011 protein_coding Homo_sapiens 0 339
ENST00000536014 KDM5A-010 protein_coding Homo_sapiens 0 401
ENST00000540156 KDM5A-004 retained_intron Homo_sapiens 0 656
ENST00000540168 KDM5A-007 retained_intron Homo_sapiens 0 549
ENST00000540838 KDM5A-003 processed_transcript Homo_sapiens 0 337
ENST00000541335 KDM5A-006 retained_intron Homo_sapiens 0 339
ENST00000543507 KDM5A-009 protein_coding Homo_sapiens 0 303
ENST00000544760 KDM5A-012 protein_coding Homo_sapiens 0 2778

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