C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100996 Kdm5a-201 ENSMUSG00000030180 10090 + 6:120364099-120444574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100996
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100996 3.359±0.73 4.567±0.47 3.789±2.06 2.418±0.88 1.689±0.57 1.839±0.60 2.169±0.38 2.208±0.79 3.672±0.51 1.409±0.39 4.778±2.46 5.666±2.02 2.563±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_00083Y CIL_00083Y_0002 VISTA 6:120053928-120655330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032922 IMP circadian regulation of gene expression
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process
GO:1901726 IDA negative regulation of histone deacetylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382815 KDM5A-201 protein_coding Homo_sapiens 0 6647
ENST00000399788 KDM5A-001 protein_coding Homo_sapiens 0 7356
ENST00000535014 KDM5A-011 protein_coding Homo_sapiens 0 339
ENST00000536014 KDM5A-010 protein_coding Homo_sapiens 0 401
ENST00000540156 KDM5A-004 retained_intron Homo_sapiens 0 656
ENST00000540168 KDM5A-007 retained_intron Homo_sapiens 0 549
ENST00000540838 KDM5A-003 processed_transcript Homo_sapiens 0 339
ENST00000541335 KDM5A-006 retained_intron Homo_sapiens 0 339
ENST00000543507 KDM5A-009 protein_coding Homo_sapiens 0 303
ENST00000544760 KDM5A-012 protein_coding Homo_sapiens 0 2778

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