C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155277 Ddx47-002 ENSMUSG00000030204 10090 + 6:135011632-135023772 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000155277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000155277 4.081±0.00 2.413±0.57 3.939±0.69 4.484±0.82 2.543±0.49 2.269±0.30 1.103±0.11 1.697±0.00 1.994±0.46 3.326±0.40 0.663±0.09 3.427±0.59 1.950±0.20 0.760±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003H5 CIL_0003H5_0002 CGP 6:134982001-135023776
CIL_0003H4 CIL_0003H4_0002 CGP 6:135011612-135084709

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352940 DDX47-002 protein_coding Homo_sapiens 0 872
ENST00000358007 DDX47-001 protein_coding Homo_sapiens 0 1240
ENST00000426619 DDX47-007 retained_intron Homo_sapiens 0 407
ENST00000534843 APOLD1-005 nonsense_mediated_decay Homo_sapiens 0 1240
ENST00000540583 APOLD1-004 nonsense_mediated_decay Homo_sapiens 6e-38 161
ENST00000541537 DDX47-003 retained_intron Homo_sapiens 0 1260
ENST00000542123 DDX47-006 retained_intron Homo_sapiens 0 484
ENST00000542832 DDX47-011 processed_transcript Homo_sapiens 0 623
ENST00000544032 DDX47-004 retained_intron Homo_sapiens 0 392
ENST00000544400 DDX47-009 protein_coding Homo_sapiens 0 483
ENST00000544497 DDX47-008 retained_intron Homo_sapiens 0 202
ENST00000545038 DDX47-005 retained_intron Homo_sapiens 0 874

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