C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032326 Ddx47-001 ENSMUSG00000030204 10090 + 6:135011612-135023776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032326 19.504±3.22 14.209±8.98 31.228±3.40 18.696±6.17 12.809±4.63 13.619±4.17 14.603±2.60 16.819±3.97 24.577±13.67 25.030±2.77 11.016±1.42 16.226±8.47 30.214±7.48 8.965±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003H5 CIL_0003H5_0002 CGP 6:134982001-135023776
CIL_0003H4 CIL_0003H4_0002 CGP 6:135011612-135084709

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005730 ISS nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006364 ISS rRNA processing
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 ISS RNA splicing
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352940 DDX47-002 protein_coding Homo_sapiens 0 889
ENST00000358007 DDX47-001 protein_coding Homo_sapiens 0 1605
ENST00000426619 DDX47-007 retained_intron Homo_sapiens 0 407
ENST00000534843 APOLD1-005 nonsense_mediated_decay Homo_sapiens 0 1611
ENST00000540583 APOLD1-004 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000541537 DDX47-003 retained_intron Homo_sapiens 0 1256
ENST00000542123 DDX47-006 retained_intron Homo_sapiens 0 484
ENST00000542832 DDX47-011 processed_transcript Homo_sapiens 0 623
ENST00000544032 DDX47-004 retained_intron Homo_sapiens 0 403
ENST00000544400 DDX47-009 protein_coding Homo_sapiens 0 483
ENST00000544497 DDX47-008 retained_intron Homo_sapiens 0 202
ENST00000545038 DDX47-005 retained_intron Homo_sapiens 0 874

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