C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RecQ protein-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030243 Recql 10090 - 6:142350342-142387087 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032370 Recql-011 142350342-142387036 protein_coding
  ENSMUST00000100832 Recql-002 142356947-142387074 protein_coding
  ENSMUST00000111803 Recql-001 142361376-142387087 protein_coding
  ENSMUST00000123912 Recql-008 142362121-142363574 protein_coding
  ENSMUST00000128082 Recql-004 142376919-142387082 protein_coding
  ENSMUST00000129694 Recql-009 142374820-142386974 protein_coding
  ENSMUST00000138578 Recql-006 142357860-142363662 processed_transcript
  ENSMUST00000141504 Recql-003 142356951-142366789 protein_coding
  ENSMUST00000143102 Recql-010 142367319-142367730 retained_intron
  ENSMUST00000154870 Recql-007 142362758-142364217 retained_intron
  ENSMUST00000155149 Recql-005 142364621-142368564 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032370ENSMUST00000111803ENSMUST00000128082ENSMUST00000141504ENSMUST00000154870ENSMUST00000155149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.027±0.00 7.670±3.61
ENSMUST00000111803 2.178±0.66 1.126±0.23 4.646±0.35 4.911±1.78 1.519±0.21 1.593±0.11 0.895±0.31 1.433±0.55 4.441±4.11 3.425±0.20 1.689±0.35 2.000±1.07 4.985±1.62 3.840±1.07
ENSMUST00000128082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.693±14.19 N/A
ENSMUST00000141504 0.993±0.16 0.935±0.16 N/A 2.002±0.10 1.444±0.53 1.651±0.14 0.434±0.04 0.691±0.11 0.556±0.26 1.395±0.17 0.439±0.03 1.271±0.28 2.013±0.56 N/A
ENSMUST00000154870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.045±0.00 N/A N/A
ENSMUST00000155149 N/A N/A N/A 14.974±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.082±13.05 57.625±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XQ CIL_0006XQ_0003 CGP 6:142298423-142363257
CIL_0005PY CIL_0005PY_0002 CGP 6:142345654-142387087
CIL_0005PT CIL_0005PT_0002 CGP 6:142350342-142403858

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000733 IEA DNA strand renaturation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003678 IEA DNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0016020 IEA membrane
GO:0032508 IEA DNA duplex unwinding
GO:0036310 IEA annealing helicase activity
GO:0043140 IEA ATP-dependent 3'-5' DNA helicase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007175 recql RecQ protein-like (DNA helicase Q1-like) protein_coding Danio_rerio
ENSG00000004700 RECQL RecQ helicase-like protein_coding Homo_sapiens

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