C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD18 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030254 Rad18 10090 - 6:112619850-112696686 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068487 Rad18-002 112619975-112696670 protein_coding
  ENSMUST00000077088 Rad18-001 112619850-112696686 protein_coding
  ENSMUST00000113180 Rad18-007 112619973-112696611 protein_coding
  ENSMUST00000113182 Rad18-006 112619945-112696604 protein_coding
  ENSMUST00000132590 Rad18-003 112626415-112696648 processed_transcript
  ENSMUST00000135092 Rad18-004 112664351-112696644 processed_transcript
  ENSMUST00000142079 Rad18-008 112620831-112675776 protein_coding
  ENSMUST00000156063 Rad18-005 112644484-112696633 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068487ENSMUST00000077088ENSMUST00000113180ENSMUST00000113182ENSMUST00000132590ENSMUST00000135092ENSMUST00000142079ENSMUST00000156063
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068487 0.646±0.02 N/A N/A 0.452±0.00 0.166±0.03 0.141±0.05 0.147±0.00 0.363±0.44 0.449±0.00 0.095±0.00 1.554±0.47 N/A 4.848±0.00
ENSMUST00000077088 0.445±0.02 0.207±0.02 0.460±0.16 0.595±0.00 0.271±0.01 N/A 0.145±0.01 2.316±1.82 0.278±0.09 0.113±0.00 1.912±0.71 1.936±0.42 N/A
ENSMUST00000113180 N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A
ENSMUST00000113182 N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENSMUST00000132590 0.345±0.11 0.186±0.00 0.384±0.01 0.718±0.34 0.315±0.08 0.054±0.02 N/A 1.269±1.53 0.192±0.08 0.118±0.03 1.874±0.80 3.233±2.41 1.153±0.00
ENSMUST00000135092 N/A N/A N/A 0.593±0.00 0.221±0.00 N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000142079 N/A N/A N/A N/A 0.785±0.10 N/A N/A N/A 0.890±0.00 N/A 3.641±1.40 N/A 24.428±0.00
ENSMUST00000156063 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CT CIL_0003CT_0002 CGP 6:112473684-112696686
CIL_0004QQ CIL_0004QQ_0002 CGP 6:112619850-112947266

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000403 IEA Y-form DNA binding
GO:0000785 IDA chromatin
GO:0001741 IDA XY body
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IEA replication fork
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0009411 IMP response to UV
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031593 IEA polyubiquitin binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0045910 IMP negative regulation of DNA recombination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027938 rad18 RAD18 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000070950 RAD18 RAD18 E3 ubiquitin protein ligase protein_coding Homo_sapiens

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