C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003CT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180914-ENSG00000070950 CGP 9606 3:8750408-8963773
GeneTranscriptPositionBiotype
ENSG00000070950 (RAD18)
RAD18 E3 ubiquitin protein ligase 		ENST00000264926 (RAD18-001) 8877076-8963502 protein_coding
ENST00000413832 (RAD18-007) 8941796-8963773 protein_coding
ENST00000415439 (RAD18-002) 8881264-8963431 nonsense_mediated_decay
ENST00000418463 (RAD18-010) 8941531-8963470 protein_coding
ENST00000421052 (RAD18-009) 8941551-8963470 protein_coding
ENST00000427329 (RAD18-008) 8775402-8902456 protein_coding
ENST00000429790 (RAD18-003) 8890109-8902398 protein_coding
ENST00000469793 (RAD18-005) 8946952-8963443 retained_intron
ENST00000473069 (RAD18-004) 8881420-8912469 retained_intron
ENST00000495087 (RAD18-006) 8941513-8963502 processed_transcript
ENSG00000180914 (OXTR)
oxytocin receptor 		ENST00000316793 (OXTR-001) 8750408-8769617 protein_coding
ENST00000431493 (OXTR-002) 8768058-8769628 protein_coding
ENST00000449615 (OXTR-004) 8767912-8768677 protein_coding
ENST00000474615 (OXTR-003) 8768443-8769613 retained_intron
ENSG00000182533 (CAV3)
caveolin 3 		ENST00000343849 (CAV3-001) 8733800-8746765 protein_coding
ENST00000397368 (CAV3-002) 8733866-8746756 protein_coding
ENST00000472766 (CAV3-003) 8733836-8841808 processed_transcript
CIL_0003CT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049112-ENSMUSG00000030254 CGP 10090 6:112473684-112696686
GeneTranscriptPositionBiotype
ENSMUSG00000029633 (Gm5578)
predicted pseudogene 5578 		ENSMUST00000121490 (Gm5578-001) 112605544-112606779 processed_pseudogene
ENSMUSG00000030254 (Rad18)
RAD18 homolog (S. cerevisiae) 		ENSMUST00000068487 (Rad18-002) 112619975-112696670 protein_coding
ENSMUST00000077088 (Rad18-001) 112619850-112696686 protein_coding
ENSMUST00000113180 (Rad18-007) 112619973-112696611 protein_coding
ENSMUST00000113182 (Rad18-006) 112619945-112696604 protein_coding
ENSMUST00000132590 (Rad18-003) 112626415-112696648 processed_transcript
ENSMUST00000135092 (Rad18-004) 112664351-112696644 processed_transcript
ENSMUST00000142079 (Rad18-008) 112620831-112675776 protein_coding
ENSMUST00000156063 (Rad18-005) 112644484-112696633 nonsense_mediated_decay
ENSMUSG00000049112 (Oxtr)
oxytocin receptor 		ENSMUST00000053306 (Oxtr-201) 112473684-112489808 protein_coding
ENSMUSG00000083443 (Gm15519)
predicted gene 15519 		ENSMUST00000120088 (Gm15519-001) 112563642-112565207 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CT_0001ENSG00000070950ENST00000264926ENST00000413832ENST00000415439ENST00000418463ENST00000421052ENST00000427329ENST00000429790ENST00000469793ENST00000473069ENST00000495087ENSG00000180914ENST00000316793ENST00000431493ENST00000449615ENST00000474615ENSG00000182533ENST00000343849ENST00000397368ENST00000472766CIL_0003CT_0002ENSMUSG00000029633ENSMUST00000121490ENSMUSG00000030254ENSMUST00000068487ENSMUST00000077088ENSMUST00000113180ENSMUST00000113182ENSMUST00000132590ENSMUST00000135092ENSMUST00000142079ENSMUST00000156063ENSMUSG00000049112ENSMUST00000053306ENSMUSG00000083443ENSMUST00000120088
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CT_0001ENSG00000070950ENST00000264926ENST00000415439ENST00000421052ENST00000495087ENSG00000180914ENST00000316793ENSG00000182533ENST00000343849ENST00000397368ENST00000472766CIL_0003CT_0002ENSMUSG00000029633ENSMUST00000121490ENSMUSG00000030254ENSMUST00000068487ENSMUST00000077088ENSMUST00000113180ENSMUST00000113182ENSMUST00000132590ENSMUST00000135092ENSMUST00000142079ENSMUST00000156063ENSMUSG00000049112ENSMUST00000053306ENSMUSG00000083443ENSMUST00000120088
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070950 ENST00000264926 N/A 0.825±0.00 N/A 0.484±0.18 0.781±0.30 0.170±0.00 0.277±0.00 0.527±0.44 0.421±0.24 0.382±0.00 N/A 1.211±0.09 0.783±0.10 1.107±0.12
ENST00000413832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415439 0.950±0.00 N/A 0.743±0.00 1.285±0.00 1.932±0.00 1.065±0.60 0.310±0.00 N/A 0.318±0.00 1.353±0.00 N/A 1.407±0.60 0.921±0.52 1.983±0.95
ENST00000418463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.089±0.00 N/A N/A
ENST00000427329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.259±0.00 N/A N/A N/A
ENSG00000180914 ENST00000316793 N/A N/A 0.011±0.00 0.493±0.00 3.804±2.36 0.048±0.00 0.019±0.00 0.010±0.00 0.013±0.00 N/A N/A 0.756±0.31 0.858±0.42 N/A
ENST00000431493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182533 ENST00000343849 N/A N/A N/A N/A 2.332±0.00 N/A 5.379±3.42 N/A N/A 0.313±0.16 19.633±2.17 0.040±0.01 N/A 0.626±0.39
ENST00000397368 N/A N/A N/A 0.017±0.00 0.265±0.14 0.252±0.00 N/A N/A N/A 0.309±0.00 6.619±0.00 N/A 0.072±0.04 N/A
ENST00000472766 N/A N/A N/A 0.038±0.00 0.333±0.00 N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.059±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029633 ENSMUST00000121490 1.516±0.87 0.246±0.12 0.060±0.04 0.143±0.08 0.650±0.11 0.231±0.11 0.103±0.07 0.193±0.19 0.118±0.06 0.224±0.13 0.052±0.03 0.492±0.30 0.042±0.02 0.207±0.12
ENSMUSG00000030254 ENSMUST00000068487 N/A 0.646±0.02 N/A N/A 0.452±0.00 0.166±0.03 0.141±0.05 0.147±0.00 0.363±0.44 0.449±0.00 0.095±0.00 1.554±0.47 N/A 4.848±0.00
ENSMUST00000077088 N/A 0.445±0.02 0.207±0.02 0.460±0.16 0.595±0.00 0.271±0.01 N/A 0.145±0.01 2.316±1.82 0.278±0.09 0.113±0.00 1.912±0.71 1.936±0.42 N/A
ENSMUST00000113180 N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A
ENSMUST00000113182 N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENSMUST00000132590 N/A 0.345±0.11 0.186±0.00 0.384±0.01 0.718±0.34 0.315±0.08 0.054±0.02 N/A 1.269±1.53 0.192±0.08 0.118±0.03 1.874±0.80 3.233±2.41 1.153±0.00
ENSMUST00000135092 N/A N/A N/A N/A 0.593±0.00 0.221±0.00 N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000142079 N/A N/A N/A N/A N/A 0.785±0.10 N/A N/A N/A 0.890±0.00 N/A 3.641±1.40 N/A 24.428±0.00
ENSMUST00000156063 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000049112 ENSMUST00000053306 7.328±2.11 52.533±13.07 0.210±0.10 0.550±0.31 13.840±7.17 0.316±0.09 0.069±0.01 0.640±0.26 0.016±0.01 0.106±0.02 0.019±0.01 12.280±7.33 0.076±0.11 1.350±0.79
ENSMUSG00000083443 ENSMUST00000120088 3.263±2.42 0.401±0.20 0.058±0.02 0.097±0.00 1.122±0.47 0.180±0.08 0.130±0.09 0.137±0.03 0.399±0.31 0.274±0.04 0.091±0.05 0.480±0.25 0.055±0.02 0.275±0.07

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