C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD18 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068487 Rad18-002 ENSMUSG00000030254 10090 - 6:112619975-112696670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000068487
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000068487 0.646±0.02 0.452±0.00 0.166±0.03 0.141±0.05 0.147±0.00 0.363±0.44 0.449±0.00 0.095±0.00 1.554±0.47 4.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CT CIL_0003CT_0002 CGP 6:112473684-112696686
CIL_0004QQ CIL_0004QQ_0002 CGP 6:112619850-112947266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000403 IEA Y-form DNA binding
GO:0000785 IDA chromatin
GO:0001741 IDA XY body
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IEA replication fork
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0009411 IMP response to UV
GO:0031593 IEA polyubiquitin binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0045910 IMP negative regulation of DNA recombination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264926 RAD18-001 protein_coding Homo_sapiens 0 955
ENST00000415439 RAD18-002 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000427329 RAD18-008 protein_coding Homo_sapiens 7e-32 141
ENST00000429790 RAD18-003 protein_coding Homo_sapiens 7e-32 141
ENST00000473069 RAD18-004 retained_intron Homo_sapiens 6e-33 145

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