C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088373 Srgap3-001 ENSMUSG00000030257 10090 - 6:112717971-112947266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088373
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088373 0.493±0.30 1.017±0.37 0.348±0.06 11.376±5.74 0.892±0.29 0.832±0.23 0.248±0.04 1.782±0.52 0.304±0.17 0.407±0.14 0.105±0.05 2.595±1.08 5.062±4.73 1.778±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0002 CGP 6:112619850-112947266
CIL_0004QB CIL_0004QB_0002 CGP 6:112717971-113068273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000140403 srgap1-001 protein_coding Danio_rerio 0 791
ENSDART00000084834 srgap3-001 protein_coding Danio_rerio 0 712
ENSDART00000088908 srgap1-201 protein_coding Danio_rerio 0 575
ENST00000304465 SRGAP2C-201 protein_coding Homo_sapiens 0 344
ENST00000360413 SRGAP3-002 protein_coding Homo_sapiens 0 3134
ENST00000367123 SRGAP2C-001 protein_coding Homo_sapiens 0 329
ENST00000383836 SRGAP3-001 protein_coding Homo_sapiens 0 5744
ENST00000419187 SRGAP2-201 protein_coding Homo_sapiens 0 355
ENST00000433332 SRGAP3-010 processed_transcript Homo_sapiens 0 1820
ENST00000470951 SRGAP3-005 retained_intron Homo_sapiens 0 1284
ENST00000475560 SRGAP3-008 processed_transcript Homo_sapiens 0 728
ENST00000480750 SRGAP3-009 processed_transcript Homo_sapiens 0 477
ENST00000485983 SRGAP3-004 retained_intron Homo_sapiens 0 1443
ENST00000490348 SRGAP3-006 processed_transcript Homo_sapiens 0 453
ENST00000490889 SRGAP3-013 processed_transcript Homo_sapiens 0 261
ENST00000491467 SRGAP3-007 retained_intron Homo_sapiens 0 381
ENST00000518265 SRGAP3-011 processed_transcript Homo_sapiens 0 560
ENST00000573034 SRGAP2-001 protein_coding Homo_sapiens 0 401
ENST00000604133 SRGAP2-012 processed_transcript Homo_sapiens 0.00000006 62
ENST00000605551 SRGAP2D-001 unprocessed_pseudogene Homo_sapiens 0 361
ENST00000605610 SRGAP2-002 protein_coding Homo_sapiens 0 416
ENST00000612199 SRGAP2B-001 protein_coding Homo_sapiens 0 366
ENST00000618999 SRGAP3-201 protein_coding Homo_sapiens 0 1823
ENST00000619678 SRGAP2B-201 protein_coding Homo_sapiens 0 366
ENST00000621582 SRGAP2B-005 nonsense_mediated_decay Homo_sapiens 2e-26 122
ENST00000624873 SRGAP2-016 protein_coding Homo_sapiens 0 416

Loading