C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: THUMP domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030264 Thumpd3 10090 + 6:113046225-113068273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032398 Thumpd3-001 113046225-113068273 protein_coding
  ENSMUST00000134657 Thumpd3-007 113047415-113051037 processed_transcript
  ENSMUST00000137396 Thumpd3-002 113046315-113060797 processed_transcript
  ENSMUST00000138278 Thumpd3-005 113046458-113047678 processed_transcript
  ENSMUST00000145054 Thumpd3-006 113046327-113049542 processed_transcript
  ENSMUST00000152795 Thumpd3-004 113046357-113048018 processed_transcript
  ENSMUST00000153310 Thumpd3-008 113065426-113067896 processed_transcript
  ENSMUST00000155378 Thumpd3-003 113046302-113055967 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032398ENSMUST00000145054ENSMUST00000155378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032398 5.093±0.72 1.660±0.00 8.095±0.47 6.778±0.86 3.800±1.23 3.915±0.82 2.425±0.27 3.369±0.74 6.822±4.95 3.277±0.45 4.425±0.25 5.866±3.74 15.170±3.50 18.678±3.69
ENSMUST00000145054 N/A N/A N/A N/A N/A N/A N/A N/A 2.681±0.00 N/A N/A 2.885±1.01 N/A N/A
ENSMUST00000155378 N/A N/A N/A 18.988±0.00 1.500±0.00 N/A N/A N/A N/A N/A N/A 37.631±0.00 44.747±15.51 116.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QB CIL_0004QB_0002 CGP 6:112717971-113068273
CIL_0004QC CIL_0004QC_0002 CGP 6:113046225-113153435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059634 thumpd3 THUMP domain containing 3 protein_coding Danio_rerio
ENSG00000134077 THUMPD3 THUMP domain containing 3 protein_coding Homo_sapiens

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