C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THUMP domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032398 Thumpd3-001 ENSMUSG00000030264 10090 + 6:113046225-113068273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032398 5.093±0.72 1.660±0.00 8.095±0.47 6.778±0.86 3.800±1.23 3.915±0.82 2.425±0.27 3.369±0.74 6.822±4.95 3.277±0.45 4.425±0.25 5.866±3.74 15.170±3.50 18.678±3.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QB CIL_0004QB_0002 CGP 6:112717971-113068273
CIL_0004QC CIL_0004QC_0002 CGP 6:113046225-113153435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345094 THUMPD3-001 protein_coding Homo_sapiens 0 1513
ENST00000416603 THUMPD3-006 protein_coding Homo_sapiens 0 501
ENST00000419437 THUMPD3-005 protein_coding Homo_sapiens 0 305
ENST00000441127 THUMPD3-009 protein_coding Homo_sapiens 0 723
ENST00000452837 THUMPD3-002 protein_coding Homo_sapiens 0 1513
ENST00000461636 THUMPD3-007 retained_intron Homo_sapiens 0 497
ENST00000464045 THUMPD3-010 retained_intron Homo_sapiens 0 438
ENST00000484006 THUMPD3-008 retained_intron Homo_sapiens 0 283
ENST00000506556 THUMPD3P1-001 unprocessed_pseudogene Homo_sapiens 0 392
ENST00000515662 THUMPD3-003 protein_coding Homo_sapiens 0 1513

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