C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: THUMP domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134077 THUMPD3 9606 + 3:9362842-9386791 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345094 THUMPD3-001 9363052-9386791 protein_coding
  ENST00000416603 THUMPD3-006 9371233-9384660 protein_coding
  ENST00000417036 THUMPD3-004 9362971-9365190 protein_coding
  ENST00000419437 THUMPD3-005 9363051-9371099 protein_coding
  ENST00000441127 THUMPD3-009 9371160-9380632 protein_coding
  ENST00000452837 THUMPD3-002 9362842-9385702 protein_coding
  ENST00000461636 THUMPD3-007 9371454-9380888 retained_intron
  ENST00000464045 THUMPD3-010 9383180-9384870 retained_intron
  ENST00000484006 THUMPD3-008 9382916-9384376 retained_intron
  ENST00000515662 THUMPD3-003 9363098-9384870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345094ENST00000416603ENST00000441127ENST00000452837ENST00000464045ENST00000515662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345094 1.794±0.00 N/A 1.597±0.00 4.313±0.00 4.137±0.00 2.650±0.00 2.469±0.00 3.869±0.00 2.291±0.33 1.332±0.00 1.181±0.16 3.025±1.20 1.722±0.47 4.500±0.00
ENST00000416603 5.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.343±0.00
ENST00000452837 2.161±0.00 8.423±0.00 N/A N/A 6.504±0.00 3.233±0.34 2.384±0.68 5.356±0.00 2.923±0.12 2.103±0.14 1.986±0.00 3.936±1.08 2.599±0.91 10.685±0.00
ENST00000464045 N/A N/A N/A N/A N/A N/A N/A 8.056±0.00 N/A 8.525±0.00 12.476±1.78 N/A N/A N/A
ENST00000515662 1.973±0.00 N/A N/A N/A N/A N/A 4.444±0.00 N/A N/A 3.124±0.00 N/A N/A N/A 7.521±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053
CIL_0004QB CIL_0004QB_0001 CGP 3:8980591-9386791
CIL_0004QC CIL_0004QC_0001 CGP 3:9362842-9479240

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059634 thumpd3 THUMP domain containing 3 protein_coding Danio_rerio
ENSMUSG00000030264 Thumpd3 THUMP domain containing 3 protein_coding Mus_musculus

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