C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134077-ENSG00000168137 CGP 9606 3:9362842-9479240
GeneTranscriptPositionBiotype
ENSG00000134077 (THUMPD3)
THUMP domain containing 3 		ENST00000345094 (THUMPD3-001) 9363052-9386791 protein_coding
ENST00000416603 (THUMPD3-006) 9371233-9384660 protein_coding
ENST00000417036 (THUMPD3-004) 9362971-9365190 protein_coding
ENST00000419437 (THUMPD3-005) 9363051-9371099 protein_coding
ENST00000441127 (THUMPD3-009) 9371160-9380632 protein_coding
ENST00000452837 (THUMPD3-002) 9362842-9385702 protein_coding
ENST00000461636 (THUMPD3-007) 9371454-9380888 retained_intron
ENST00000464045 (THUMPD3-010) 9383180-9384870 retained_intron
ENST00000484006 (THUMPD3-008) 9382916-9384376 retained_intron
ENST00000515662 (THUMPD3-003) 9363098-9384870 protein_coding
ENSG00000168137 (SETD5)
SET domain containing 5 		ENST00000302463 (SETD5-003) 9429950-9476478 protein_coding
ENST00000399686 (SETD5-015) 9442167-9479240 protein_coding
ENST00000402198 (SETD5-201) 9397719-9478154 protein_coding
ENST00000406341 (SETD5-001) 9397904-9478154 protein_coding
ENST00000407969 (SETD5-004) 9428925-9478154 protein_coding
ENST00000413704 (SETD5-016) 9442170-9476154 nonsense_mediated_decay
ENST00000415650 (SETD5-021) 9397873-9433878 nonsense_mediated_decay
ENST00000421188 (SETD5-013) 9447970-9473372 protein_coding
ENST00000431285 (SETD5-007) 9397615-9440698 nonsense_mediated_decay
ENST00000442373 (SETD5-023) 9429925-9441626 protein_coding
ENST00000443339 (SETD5-002) 9397900-9464753 nonsense_mediated_decay
ENST00000450326 (SETD5-020) 9397719-9435825 protein_coding
ENST00000459941 (SETD5-014) 9473395-9475705 retained_intron
ENST00000463180 (SETD5-019) 9397856-9429325 retained_intron
ENST00000464410 (SETD5-025) 9445439-9447718 retained_intron
ENST00000466172 (SETD5-009) 9429973-9431876 processed_transcript
ENST00000466242 (SETD5-006) 9442890-9476459 retained_intron
ENST00000466826 (SETD5-029) 9475050-9475659 retained_intron
ENST00000468208 (SETD5-022) 9423211-9429008 processed_transcript
ENST00000476740 (SETD5-030) 9448559-9464693 processed_transcript
ENST00000478475 (SETD5-010) 9397863-9433397 processed_transcript
ENST00000478961 (SETD5-012) 9448475-9464810 processed_transcript
ENST00000479538 (SETD5-028) 9473423-9474971 processed_transcript
ENST00000486465 (SETD5-026) 9470667-9474769 retained_intron
ENST00000488236 (SETD5-011) 9447687-9464954 processed_transcript
ENST00000490791 (SETD5-008) 9433485-9440507 processed_transcript
ENST00000492939 (SETD5-027) 9473236-9475265 retained_intron
ENST00000493918 (SETD5-005) 9433993-9476459 retained_intron
ENST00000497213 (SETD5-024) 9442170-9445732 processed_transcript
ENSG00000196220 (SRGAP3)
SLIT-ROBO Rho GTPase activating protein 3 		ENST00000360413 (SRGAP3-002) 8980594-9249213 protein_coding
ENST00000383836 (SRGAP3-001) 8980591-9249379 protein_coding
ENST00000433332 (SRGAP3-010) 9014742-9216760 processed_transcript
ENST00000470951 (SRGAP3-005) 9058738-9248991 retained_intron
ENST00000475560 (SRGAP3-008) 9013420-9049354 processed_transcript
ENST00000480750 (SRGAP3-009) 9060231-9065530 processed_transcript
ENST00000485983 (SRGAP3-004) 9033431-9081287 retained_intron
ENST00000490348 (SRGAP3-006) 9235522-9249685 processed_transcript
ENST00000490889 (SRGAP3-013) 9124738-9363053 processed_transcript
ENST00000491467 (SRGAP3-007) 8992628-8994454 retained_intron
ENST00000518265 (SRGAP3-011) 9006963-9013842 processed_transcript
ENST00000520860 (SRGAP3-012) 8993959-9010374 processed_transcript
ENST00000618999 (SRGAP3-201) 9006979-9124977 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0004QC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030264-ENSMUSG00000034269 CGP 10090 6:113046225-113153435
GeneTranscriptPositionBiotype
ENSMUSG00000030264 (Thumpd3)
THUMP domain containing 3 		ENSMUST00000032398 (Thumpd3-001) 113046225-113068273 protein_coding
ENSMUST00000134657 (Thumpd3-007) 113047415-113051037 processed_transcript
ENSMUST00000137396 (Thumpd3-002) 113046315-113060797 processed_transcript
ENSMUST00000138278 (Thumpd3-005) 113046458-113047678 processed_transcript
ENSMUST00000145054 (Thumpd3-006) 113046327-113049542 processed_transcript
ENSMUST00000152795 (Thumpd3-004) 113046357-113048018 processed_transcript
ENSMUST00000153310 (Thumpd3-008) 113065426-113067896 processed_transcript
ENSMUST00000155378 (Thumpd3-003) 113046302-113055967 protein_coding
ENSMUSG00000034269 (Setd5)
SET domain containing 5 		ENSMUST00000042889 (Setd5-001) 113077365-113153435 protein_coding
ENSMUST00000113155 (Setd5-002) 113105037-113153435 protein_coding
ENSMUST00000113157 (Setd5-201) 113077639-113153424 protein_coding
ENSMUST00000124467 (Setd5-007) 113108873-113117931 retained_intron
ENSMUST00000125003 (Setd5-012) 113077602-113117617 processed_transcript
ENSMUST00000136128 (Setd5-004) 113077561-113106319 processed_transcript
ENSMUST00000138327 (Setd5-009) 113110417-113117586 retained_intron
ENSMUST00000141072 (Setd5-005) 113077578-113138903 retained_intron
ENSMUST00000142215 (Setd5-006) 113105084-113151835 processed_transcript
ENSMUST00000143998 (Setd5-003) 113077365-113107561 retained_intron
ENSMUST00000149584 (Setd5-008) 113109865-113151835 retained_intron
ENSMUST00000150107 (Setd5-010) 113127749-113151856 retained_intron
ENSMUST00000153513 (Setd5-011) 113104935-113138275 processed_transcript
ENSMUST00000156048 (Setd5-013) 113128681-113138511 processed_transcript
ENSMUSG00000086429 (Gt(ROSA)26Sor)
gene trap ROSA 26, Philippe Soriano 		ENSMUST00000124246 (Gt(ROSA)26Sor-002) 113070398-113077210 antisense
ENSMUST00000133467 (Gt(ROSA)26Sor-001) 113067659-113077177 antisense
ENSMUST00000159544 (Gt(ROSA)26Sor-003) 113070774-113077333 antisense
ENSMUST00000167415 (Gt(ROSA)26Sor-004) 113067428-113077191 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QC_0001ENSG00000134077ENST00000345094ENST00000416603ENST00000417036ENST00000419437ENST00000441127ENST00000452837ENST00000461636ENST00000464045ENST00000484006ENST00000515662ENSG00000168137ENST00000302463ENST00000399686ENST00000402198ENST00000406341ENST00000407969ENST00000413704ENST00000415650ENST00000421188ENST00000431285ENST00000442373ENST00000443339ENST00000450326ENST00000459941ENST00000463180ENST00000464410ENST00000466172ENST00000466242ENST00000466826ENST00000468208ENST00000476740ENST00000478475ENST00000478961ENST00000479538ENST00000486465ENST00000488236ENST00000490791ENST00000492939ENST00000493918ENST00000497213ENSG00000196220ENST00000360413ENST00000383836ENST00000433332ENST00000470951ENST00000475560ENST00000480750ENST00000485983ENST00000490348ENST00000490889ENST00000491467ENST00000518265ENST00000520860ENST00000618999CIL_0004QC_0002ENSMUSG00000030264ENSMUST00000032398ENSMUST00000134657ENSMUST00000137396ENSMUST00000138278ENSMUST00000145054ENSMUST00000152795ENSMUST00000153310ENSMUST00000155378ENSMUSG00000034269ENSMUST00000042889ENSMUST00000113155ENSMUST00000113157ENSMUST00000124467ENSMUST00000125003ENSMUST00000136128ENSMUST00000138327ENSMUST00000141072ENSMUST00000142215ENSMUST00000143998ENSMUST00000149584ENSMUST00000150107ENSMUST00000153513ENSMUST00000156048ENSMUSG00000086429ENSMUST00000124246ENSMUST00000133467ENSMUST00000159544ENSMUST00000167415
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QC_0001ENSG00000134077ENST00000345094ENST00000416603ENST00000441127ENST00000452837ENST00000464045ENST00000515662ENSG00000168137ENST00000302463ENST00000402198ENST00000406341ENST00000407969ENST00000442373ENST00000466242ENST00000479538ENST00000492939ENST00000493918ENSG00000196220ENST00000360413ENST00000383836ENST00000490348CIL_0004QC_0002ENSMUSG00000030264ENSMUST00000032398ENSMUST00000145054ENSMUST00000155378ENSMUSG00000034269ENSMUST00000042889ENSMUST00000113155ENSMUST00000113157ENSMUST00000125003ENSMUST00000142215ENSMUST00000149584ENSMUST00000150107ENSMUST00000153513ENSMUSG00000086429ENSMUST00000124246ENSMUST00000159544
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134077 ENST00000345094 1.794±0.00 N/A 1.597±0.00 4.313±0.00 4.137±0.00 2.650±0.00 2.469±0.00 3.869±0.00 2.291±0.33 1.332±0.00 1.181±0.16 3.025±1.20 1.722±0.47 4.500±0.00
ENST00000416603 5.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.343±0.00
ENST00000452837 2.161±0.00 8.423±0.00 N/A N/A 6.504±0.00 3.233±0.34 2.384±0.68 5.356±0.00 2.923±0.12 2.103±0.14 1.986±0.00 3.936±1.08 2.599±0.91 10.685±0.00
ENST00000461636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464045 N/A N/A N/A N/A N/A N/A N/A 8.056±0.00 N/A 8.525±0.00 12.476±1.78 N/A N/A N/A
ENST00000484006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515662 1.973±0.00 N/A N/A N/A N/A N/A 4.444±0.00 N/A N/A 3.124±0.00 N/A N/A N/A 7.521±0.00
ENSG00000168137 ENST00000302463 N/A N/A N/A 0.800±0.00 3.676±0.00 N/A N/A N/A N/A N/A N/A N/A 1.416±0.00 N/A
ENST00000399686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402198 N/A N/A N/A 2.412±0.00 1.476±0.00 N/A N/A N/A N/A N/A 1.313±0.00 10.818±0.00 6.226±7.49 N/A
ENST00000406341 3.135±0.00 N/A N/A 1.908±0.45 2.105±0.00 2.087±0.00 2.181±0.00 N/A 0.686±0.00 3.184±0.00 1.395±0.00 2.381±0.19 N/A 4.182±0.00
ENST00000407969 5.135±0.00 4.519±0.00 2.283±0.00 1.542±0.00 3.887±0.61 5.012±0.00 N/A 8.484±0.00 2.800±1.27 6.928±1.30 2.131±0.92 5.012±4.13 2.220±0.73 5.611±0.00
ENST00000413704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.012±0.00 N/A N/A
ENST00000443339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466242 N/A N/A N/A N/A N/A N/A 0.931±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000466826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479538 N/A N/A 48.554±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492939 N/A N/A 26.838±0.00 12.175±0.00 N/A 43.755±0.00 N/A N/A N/A N/A 28.940±0.00 N/A N/A N/A
ENST00000493918 N/A N/A N/A N/A N/A N/A 0.703±0.00 N/A 2.792±0.00 N/A N/A N/A N/A N/A
ENST00000497213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196220 ENST00000360413 N/A N/A N/A 3.912±0.86 N/A N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 N/A
ENST00000383836 N/A N/A 0.973±0.00 4.607±0.09 N/A N/A 0.566±0.00 1.265±0.00 1.380±0.00 0.691±0.00 N/A 2.964±0.00 N/A N/A
ENST00000433332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490348 N/A N/A 3.298±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030264 ENSMUST00000032398 5.093±0.72 1.660±0.00 8.095±0.47 6.778±0.86 3.800±1.23 3.915±0.82 2.425±0.27 3.369±0.74 6.822±4.95 3.277±0.45 4.425±0.25 5.866±3.74 15.170±3.50 18.678±3.69
ENSMUST00000134657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145054 N/A N/A N/A N/A N/A N/A N/A N/A 2.681±0.00 N/A N/A 2.885±1.01 N/A N/A
ENSMUST00000152795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155378 N/A N/A N/A 18.988±0.00 1.500±0.00 N/A N/A N/A N/A N/A N/A 37.631±0.00 44.747±15.51 116.647±0.00
ENSMUSG00000034269 ENSMUST00000042889 5.630±0.96 3.931±0.41 7.737±0.56 8.114±2.98 3.313±1.41 3.466±0.77 1.939±0.51 2.055±0.25 2.939±1.75 5.335±1.70 1.782±0.58 4.057±1.48 8.004±1.39 2.811±0.49
ENSMUST00000113155 N/A 4.792±1.08 7.899±0.26 11.570±4.10 2.655±0.00 N/A 1.347±0.00 2.055±0.89 4.292±1.57 N/A 1.514±0.39 18.365±9.72 8.849±0.48 3.241±0.00
ENSMUST00000113157 3.718±1.47 4.143±0.87 N/A N/A 3.469±0.50 5.510±0.87 1.733±0.07 1.842±0.55 1.530±0.27 5.045±1.46 1.775±0.73 4.258±1.70 23.659±0.82 2.811±1.16
ENSMUST00000124467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125003 N/A N/A N/A N/A N/A 26.043±6.79 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142215 N/A N/A N/A N/A 3.594±0.00 N/A 1.381±0.00 N/A N/A N/A N/A N/A N/A 1.661±0.00
ENSMUST00000143998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.250±0.00 N/A N/A
ENSMUST00000150107 6.335±1.04 6.777±0.89 N/A N/A 6.452±1.49 10.149±2.57 N/A 4.319±1.06 N/A 3.753±0.00 N/A 7.277±2.75 N/A N/A
ENSMUST00000153513 N/A N/A N/A 5.792±0.00 N/A N/A N/A N/A N/A N/A N/A 12.760±0.00 12.974±1.33 N/A
ENSMUST00000156048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086429 ENSMUST00000124246 5.869±0.00 4.179±0.00 15.283±3.14 9.824±5.38 4.282±1.23 7.418±1.01 1.595±0.13 1.687±0.02 10.127±7.67 5.552±1.62 3.594±0.54 5.703±2.67 7.894±2.29 N/A
ENSMUST00000133467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159544 8.617±0.06 3.711±0.00 9.984±0.00 8.754±0.00 5.210±1.83 5.248±1.23 2.552±0.69 3.944±0.82 6.617±4.08 6.468±2.91 N/A 4.762±1.39 N/A 24.273±3.02
ENSMUST00000167415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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