C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030465 Psd3 10090 - 8:67689082-68062286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038959 Psd3-201 67689082-67974574 protein_coding
  ENSMUST00000059374 Psd3-005 67711526-67818233 protein_coding
  ENSMUST00000093468 Psd3-002 67696881-67910932 protein_coding
  ENSMUST00000093469 Psd3-003 67696047-67974574 protein_coding
  ENSMUST00000098696 Psd3-202 67689082-67974574 protein_coding
  ENSMUST00000120071 Psd3-004 67689089-67818295 protein_coding
  ENSMUST00000145595 Psd3-006 67903648-67951879 retained_intron
  ENSMUST00000146480 Psd3-007 67878278-67904120 processed_transcript
  ENSMUST00000150169 Psd3-001 67790470-68062286 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038959ENSMUST00000093468ENSMUST00000093469ENSMUST00000098696ENSMUST00000120071ENSMUST00000150169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038959 N/A 0.556±0.00 N/A 0.920±0.05 0.625±0.00 0.295±0.00 N/A N/A N/A N/A N/A 0.638±0.29 N/A N/A
ENSMUST00000093468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.219±2.16
ENSMUST00000093469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.614±0.02
ENSMUST00000098696 N/A 0.552±0.00 0.448±0.00 N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A 0.720±0.32 N/A N/A
ENSMUST00000120071 0.711±0.25 3.099±1.19 2.401±0.19 8.061±6.07 1.333±1.07 2.011±0.55 2.722±0.21 0.794±0.37 1.191±0.54 2.716±1.29 0.544±0.27 2.082±0.67 0.576±0.04 1.886±1.08
ENSMUST00000150169 N/A 2.530±0.14 N/A N/A N/A 1.879±0.39 N/A N/A 1.464±0.20 N/A N/A 1.767±0.20 0.669±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T2 CIL_0003T2_0002 CGP 8:67523854-68062286
CIL_0004EP CIL_0004EP_0002 CGP 8:67689082-68347694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IDA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032011 IC ARF protein signal transduction
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053210 psd3l pleckstrin and Sec7 domain containing 3, like protein_coding Danio_rerio
ENSG00000156011 PSD3 pleckstrin and Sec7 domain containing 3 protein_coding Homo_sapiens

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