C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120071 Psd3-004 ENSMUSG00000030465 10090 - 8:67689089-67818295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120071 0.711±0.25 3.099±1.19 2.401±0.19 8.061±6.07 1.333±1.07 2.011±0.55 2.722±0.21 0.794±0.37 1.191±0.54 2.716±1.29 0.544±0.27 2.082±0.67 0.576±0.04 1.886±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T2 CIL_0003T2_0002 CGP 8:67523854-68062286
CIL_0004EP CIL_0004EP_0002 CGP 8:67689082-68347694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IDA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032011 IC ARF protein signal transduction
GO:0043547 IDA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286485 PSD3-003 protein_coding Homo_sapiens 0 1637
ENST00000327040 PSD3-001 protein_coding Homo_sapiens 0 1637
ENST00000428502 PSD3-006 protein_coding Homo_sapiens 0 1997
ENST00000440756 PSD3-201 protein_coding Homo_sapiens 0 1637
ENST00000518315 PSD3-004 nonsense_mediated_decay Homo_sapiens 0 1351
ENST00000521878 PSD3-018 processed_transcript Homo_sapiens 0 623
ENST00000523619 PSD3-002 protein_coding Homo_sapiens 0 1637
ENST00000614430 PSD3-202 protein_coding Homo_sapiens 0 833
ENST00000615573 PSD3-203 protein_coding Homo_sapiens 0 832

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