C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156011 PSD3 9606 - 8:18527301-19084730 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286485 PSD3-003 18530710-18808876 protein_coding
  ENST00000327040 PSD3-001 18527301-19013686 protein_coding
  ENST00000428502 PSD3-006 18530711-18684099 protein_coding
  ENST00000440756 PSD3-201 18527303-19013686 protein_coding
  ENST00000517971 PSD3-012 18799298-18808867 nonsense_mediated_decay
  ENST00000518303 PSD3-014 18800997-18854336 retained_intron
  ENST00000518315 PSD3-004 18535637-18808832 nonsense_mediated_decay
  ENST00000518963 PSD3-015 18799148-18804867 retained_intron
  ENST00000519633 PSD3-013 18804360-18808895 retained_intron
  ENST00000519653 PSD3-016 18786776-18808863 processed_transcript
  ENST00000519851 PSD3-010 18765449-18854374 protein_coding
  ENST00000520789 PSD3-009 18924533-18940452 processed_transcript
  ENST00000520858 PSD3-017 18762885-18804829 protein_coding
  ENST00000521027 PSD3-011 18802276-18804874 protein_coding
  ENST00000521475 PSD3-019 18936041-19084730 protein_coding
  ENST00000521841 PSD3-008 18936053-19014460 processed_transcript
  ENST00000521878 PSD3-018 18535720-18684121 processed_transcript
  ENST00000523619 PSD3-002 18530711-18887034 protein_coding
  ENST00000614430 PSD3-202 18530561-18684076 protein_coding
  ENST00000615573 PSD3-203 18530710-18683932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327040ENST00000440756ENST00000518315ENST00000519633ENST00000523619ENST00000615573
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327040 N/A N/A N/A 3.001±0.00 0.670±0.00 0.681±0.00 N/A N/A 0.856±0.00 0.907±0.22 0.015±0.00 1.913±1.30 0.469±0.05 1.827±0.11
ENST00000440756 0.295±0.00 0.693±0.00 N/A N/A 0.459±0.19 0.144±0.00 1.037±0.31 3.037±2.86 1.455±0.00 0.335±0.00 0.017±0.00 1.023±0.83 0.384±0.00 N/A
ENST00000518315 N/A N/A 0.896±0.00 N/A N/A 2.882±0.00 4.830±0.00 N/A N/A 2.045±0.00 N/A N/A N/A 10.914±0.03
ENST00000519633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.862±0.00
ENST00000523619 N/A N/A N/A N/A 1.137±0.00 1.031±0.00 N/A 4.242±0.00 0.864±0.00 0.810±0.00 N/A N/A N/A N/A
ENST00000615573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T2 CIL_0003T2_0001 CGP 8:18391245-19084730
CIL_0004EP CIL_0004EP_0001 CGP 8:18527301-19396218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0016020 IEA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053210 psd3l pleckstrin and Sec7 domain containing 3, like protein_coding Danio_rerio
ENSMUSG00000030465 Psd3 pleckstrin and Sec7 domain containing 3 protein_coding Mus_musculus

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