C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 33B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030534 Vps33b 10090 + 7:80269649-80291579 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032749 Vps33b-001 80269649-80291579 protein_coding
  ENSMUST00000128254 Vps33b-005 80269734-80285750 retained_intron
  ENSMUST00000135053 Vps33b-003 80269740-80291571 nonsense_mediated_decay
  ENSMUST00000135470 Vps33b-006 80290056-80290878 retained_intron
  ENSMUST00000145594 Vps33b-004 80274294-80284075 processed_transcript
  ENSMUST00000150585 Vps33b-002 80269679-80291573 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032749ENSMUST00000128254ENSMUST00000135053ENSMUST00000150585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032749 4.441±1.13 3.796±1.45 5.196±0.31 8.234±4.11 3.415±0.72 4.154±0.65 1.599±0.09 3.543±0.59 2.867±1.69 4.240±1.09 0.771±0.26 3.796±1.55 5.660±0.94 3.005±1.22
ENSMUST00000128254 N/A N/A N/A 2.930±0.00 N/A N/A N/A N/A N/A N/A 0.224±0.00 2.488±0.00 N/A 0.268±0.00
ENSMUST00000135053 N/A N/A N/A N/A 1.634±0.00 N/A N/A N/A N/A N/A N/A 1.577±0.00 N/A 0.338±0.00
ENSMUST00000150585 0.780±0.00 3.349±1.00 1.601±0.27 1.699±0.44 1.242±0.00 1.468±0.00 N/A 0.899±0.24 0.935±0.51 1.296±0.11 0.393±0.18 1.314±0.55 1.582±0.07 0.743±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005770 IEA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016192 ISA vesicle-mediated transport
GO:0030897 IEA HOPS complex
GO:0031091 IEA platelet alpha granule
GO:0032400 IEA melanosome localization
GO:0032418 IEA lysosome localization
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061025 IEA membrane fusion
GO:0070889 IEA platelet alpha granule organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044813 vps33b vacuolar protein sorting 33B protein_coding Danio_rerio
ENSG00000184056 VPS33B vacuolar protein sorting 33 homolog B (yeast) protein_coding Homo_sapiens

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