C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032749 Vps33b-001 ENSMUSG00000030534 10090 + 7:80269649-80291579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032749 4.441±1.13 3.796±1.45 5.196±0.31 8.234±4.11 3.415±0.72 4.154±0.65 1.599±0.09 3.543±0.59 2.867±1.69 4.240±1.09 0.771±0.26 3.796±1.55 5.660±0.94 3.005±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005770 IEA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016192 ISA vesicle-mediated transport
GO:0030897 IEA HOPS complex
GO:0031091 IEA platelet alpha granule
GO:0032400 IEA melanosome localization
GO:0032418 IEA lysosome localization
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061025 IEA membrane fusion
GO:0070889 IEA platelet alpha granule organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333371 VPS33B-001 protein_coding Homo_sapiens 0 2586
ENST00000535906 VPS33B-003 protein_coding Homo_sapiens 0 2292
ENST00000554264 VPS33B-008 retained_intron Homo_sapiens 0 516
ENST00000554660 VPS33B-005 retained_intron Homo_sapiens 0 388
ENST00000556096 VPS33B-002 retained_intron Homo_sapiens 0 673
ENST00000557358 VPS33B-006 processed_transcript Homo_sapiens 3e-40 169
ENST00000557470 VPS33B-007 retained_intron Homo_sapiens 0 230
ENST00000574755 VPS33B-004 nonsense_mediated_decay Homo_sapiens 0 2209

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