C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuolar protein sorting 33B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128254 Vps33b-005 ENSMUSG00000030534 10090 + 7:80269734-80285750 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryTestisENSMUST00000128254
Transcript ID Brain Muscle Ovary Testis
ENSMUST00000128254 2.930±0.00 0.224±0.00 2.488±0.00 0.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333371 VPS33B-001 protein_coding Homo_sapiens 0 1450
ENST00000535906 VPS33B-003 protein_coding Homo_sapiens 0 1158
ENST00000554264 VPS33B-008 retained_intron Homo_sapiens 0 516
ENST00000556096 VPS33B-002 retained_intron Homo_sapiens 0 673
ENST00000557358 VPS33B-006 processed_transcript Homo_sapiens 3e-40 169
ENST00000574755 VPS33B-004 nonsense_mediated_decay Homo_sapiens 0 1075

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